miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24507 5' -53.4 NC_005264.1 + 52717 0.67 0.951602
Target:  5'- cCCAaaAGCGCGGcGGCucucGGCCccugUCGUUCu -3'
miRNA:   3'- -GGUaaUUGCGUC-CCG----UCGGa---AGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 108603 0.67 0.933013
Target:  5'- aCGUUGgcGCGCGGGGCcGCC-UCGaCa- -3'
miRNA:   3'- gGUAAU--UGCGUCCCGuCGGaAGC-Gag -5'
24507 5' -53.4 NC_005264.1 + 146675 0.67 0.938029
Target:  5'- aCCucc-GCGCAGGGCGGCa-UUGC-Cg -3'
miRNA:   3'- -GGuaauUGCGUCCCGUCGgaAGCGaG- -5'
24507 5' -53.4 NC_005264.1 + 15726 0.67 0.938029
Target:  5'- gCAagAACGCGGcacGGCGGCCUg-GCUUg -3'
miRNA:   3'- gGUaaUUGCGUC---CCGUCGGAagCGAG- -5'
24507 5' -53.4 NC_005264.1 + 85027 0.67 0.942798
Target:  5'- gCCAUgugcCGCGGGGCauucGGCaacgUCGCUa -3'
miRNA:   3'- -GGUAauu-GCGUCCCG----UCGga--AGCGAg -5'
24507 5' -53.4 NC_005264.1 + 26993 0.67 0.947321
Target:  5'- aCGUggcACGC-GGGUAGCCauucUCGCUUu -3'
miRNA:   3'- gGUAau-UGCGuCCCGUCGGa---AGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 55086 0.67 0.951602
Target:  5'- gCCAUUGACGCGGaGGCAaC--UCGCa- -3'
miRNA:   3'- -GGUAAUUGCGUC-CCGUcGgaAGCGag -5'
24507 5' -53.4 NC_005264.1 + 23715 0.67 0.951602
Target:  5'- cCCuc-AACGCccaaAGGGCAcacGCCgcCGCUCa -3'
miRNA:   3'- -GGuaaUUGCG----UCCCGU---CGGaaGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 35271 0.67 0.951602
Target:  5'- aCAcUGGCGCGGGcGCGGCCguggUCcugacuGUUCa -3'
miRNA:   3'- gGUaAUUGCGUCC-CGUCGGa---AG------CGAG- -5'
24507 5' -53.4 NC_005264.1 + 55341 0.68 0.916473
Target:  5'- gCGUUGuCGCucgcGGCGGCCUUCGUc- -3'
miRNA:   3'- gGUAAUuGCGuc--CCGUCGGAAGCGag -5'
24507 5' -53.4 NC_005264.1 + 121857 0.69 0.897709
Target:  5'- -gGUUGGCGgAGGGcCGGUCg-CGCUCg -3'
miRNA:   3'- ggUAAUUGCgUCCC-GUCGGaaGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 107892 0.69 0.897709
Target:  5'- gCCAUUAGCGUguucAGGagccacucGCAGCCgUUCGC-Ca -3'
miRNA:   3'- -GGUAAUUGCG----UCC--------CGUCGG-AAGCGaG- -5'
24507 5' -53.4 NC_005264.1 + 124976 0.72 0.735399
Target:  5'- cCCuc--GCGCAGGGCAGCggcgcaUUCGCg- -3'
miRNA:   3'- -GGuaauUGCGUCCCGUCGg-----AAGCGag -5'
24507 5' -53.4 NC_005264.1 + 112882 0.72 0.745337
Target:  5'- uCCGUaccuuCGUAGGGCAgGCC-UCGUUCa -3'
miRNA:   3'- -GGUAauu--GCGUCCCGU-CGGaAGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 24872 0.7 0.837452
Target:  5'- aCCGga-GC-CGGGGCGGCacgaggCUUCGCUCu -3'
miRNA:   3'- -GGUaauUGcGUCCCGUCG------GAAGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 138839 0.69 0.869349
Target:  5'- aCCAUgGACGCGGGGaucuauGCCUUCuaUg -3'
miRNA:   3'- -GGUAaUUGCGUCCCgu----CGGAAGcgAg -5'
24507 5' -53.4 NC_005264.1 + 67014 0.69 0.876785
Target:  5'- gCCug-GACGgAGcGGCGGCCUUgCGCa- -3'
miRNA:   3'- -GGuaaUUGCgUC-CCGUCGGAA-GCGag -5'
24507 5' -53.4 NC_005264.1 + 81611 0.69 0.876785
Target:  5'- gCCGcu-GCGcCAGGGaCGGCCgaUGCUCa -3'
miRNA:   3'- -GGUaauUGC-GUCCC-GUCGGaaGCGAG- -5'
24507 5' -53.4 NC_005264.1 + 68248 0.69 0.89097
Target:  5'- gCCAUgcccGCGCcgcGGGCGGCCUgcuGCUg -3'
miRNA:   3'- -GGUAau--UGCGu--CCCGUCGGAag-CGAg -5'
24507 5' -53.4 NC_005264.1 + 116876 0.69 0.89097
Target:  5'- cCCAUacAACGUgacGGCAGCCUcgUGCUCa -3'
miRNA:   3'- -GGUAa-UUGCGuc-CCGUCGGAa-GCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.