miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24514 5' -49.7 NC_005264.1 + 162756 0.68 0.988951
Target:  5'- cGCGUGCgCCGAuaaguGCGAGGUgcugGAGCGuGGg -3'
miRNA:   3'- cCGCAUG-GGUU-----UGUUCUA----UUCGC-CCg -5'
24514 5' -49.7 NC_005264.1 + 162547 0.66 0.99794
Target:  5'- uGGUaUACCCAGcgcucuucGCcAGAaugaucUAAGUGGGCu -3'
miRNA:   3'- -CCGcAUGGGUU--------UGuUCU------AUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 162236 0.68 0.993438
Target:  5'- cGGCGggggggggggggGCUacGGCGGGGcuGGCGGGCg -3'
miRNA:   3'- -CCGCa-----------UGGguUUGUUCUauUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 162154 0.69 0.97978
Target:  5'- cGCgGUGCCUGGACAccuaagcacGGGUgGAGCGGGg -3'
miRNA:   3'- cCG-CAUGGGUUUGU---------UCUA-UUCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 161192 0.66 0.99794
Target:  5'- uGGCGUaacGCCCGGAaaGAGAU-GGCaGGUu -3'
miRNA:   3'- -CCGCA---UGGGUUUg-UUCUAuUCGcCCG- -5'
24514 5' -49.7 NC_005264.1 + 160394 0.67 0.995277
Target:  5'- cGUGUGCCgCAAGgAAGAgu-GCaGGCu -3'
miRNA:   3'- cCGCAUGG-GUUUgUUCUauuCGcCCG- -5'
24514 5' -49.7 NC_005264.1 + 158094 0.72 0.920537
Target:  5'- cGGCGguccaccCCCGGACGccGGcucGGCGGGCa -3'
miRNA:   3'- -CCGCau-----GGGUUUGU--UCuauUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 157838 0.72 0.926206
Target:  5'- cGGCG-ACCCcggcgcGGACGAGAacgacgacgaUGcGCGGGCa -3'
miRNA:   3'- -CCGCaUGGG------UUUGUUCU----------AUuCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 157341 0.72 0.936774
Target:  5'- cGCGgagGCC--GACGAGGguuGGCGGGCc -3'
miRNA:   3'- cCGCa--UGGguUUGUUCUau-UCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 156678 0.71 0.962444
Target:  5'- cGCGUcgcuuuguacaGCCCGcGCGAGAcccAGGaCGGGCg -3'
miRNA:   3'- cCGCA-----------UGGGUuUGUUCUa--UUC-GCCCG- -5'
24514 5' -49.7 NC_005264.1 + 156673 0.69 0.97978
Target:  5'- cGGCGUGCCCcacacguGCAcgcGAUGcGCgacGGGCg -3'
miRNA:   3'- -CCGCAUGGGuu-----UGUu--CUAUuCG---CCCG- -5'
24514 5' -49.7 NC_005264.1 + 156122 0.7 0.977411
Target:  5'- uGGCccGCCCAAggugguggGCAGGAcgaGGGCGaGGCg -3'
miRNA:   3'- -CCGcaUGGGUU--------UGUUCUa--UUCGC-CCG- -5'
24514 5' -49.7 NC_005264.1 + 154620 0.72 0.920537
Target:  5'- uGGCGUACUCGGACcAGcgGccGCGGGg -3'
miRNA:   3'- -CCGCAUGGGUUUGuUCuaUu-CGCCCg -5'
24514 5' -49.7 NC_005264.1 + 153736 0.69 0.985781
Target:  5'- cGGCGcgACUCAagauGAUggGAUA-GCGGGa -3'
miRNA:   3'- -CCGCa-UGGGU----UUGuuCUAUuCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 152677 0.67 0.996562
Target:  5'- gGGCuGggaCCAAGCGGG---GGCGGGUa -3'
miRNA:   3'- -CCG-CaugGGUUUGUUCuauUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 150778 0.68 0.993626
Target:  5'- gGGCGccuuugGCUCGcacCGGGAUGGuucGCGGGCg -3'
miRNA:   3'- -CCGCa-----UGGGUuu-GUUCUAUU---CGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 150539 0.68 0.988951
Target:  5'- aGGCGgcuccagGCUCGGGCGGGGaGGGCcguugggguggGGGCg -3'
miRNA:   3'- -CCGCa------UGGGUUUGUUCUaUUCG-----------CCCG- -5'
24514 5' -49.7 NC_005264.1 + 150418 0.68 0.991541
Target:  5'- cGCGccUCCAAGCAcGu--AGCGGGCc -3'
miRNA:   3'- cCGCauGGGUUUGUuCuauUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 147704 0.68 0.993626
Target:  5'- gGGCgGUGCagaCAGACcauuccccaGAGAaAGGUGGGCc -3'
miRNA:   3'- -CCG-CAUGg--GUUUG---------UUCUaUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 146754 0.68 0.990314
Target:  5'- cGGCGgACCCGgcaacAGCAAGcgccGCGcGGCg -3'
miRNA:   3'- -CCGCaUGGGU-----UUGUUCuauuCGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.