miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24519 3' -56.5 NC_005264.1 + 60285 0.66 0.88322
Target:  5'- cGCGUCGGGCAugacguacUCGGAuuCGGGCGc- -3'
miRNA:   3'- aUGCGGCUCGU--------AGUCUcuGUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 138379 0.66 0.871734
Target:  5'- cACGCCGAcgauguucgagggcaGCuguuUCGGcaagccaauccGGGCGGGCGUGu -3'
miRNA:   3'- aUGCGGCU---------------CGu---AGUC-----------UCUGUCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 154480 0.66 0.868775
Target:  5'- gGCGCCGguaAGCAUCAGcGACGGuCGc- -3'
miRNA:   3'- aUGCGGC---UCGUAGUCuCUGUCcGCac -5'
24519 3' -56.5 NC_005264.1 + 79378 0.66 0.868775
Target:  5'- aGCaCCGAGUuacuUCAGAaccgccGCGGGCGUGg -3'
miRNA:   3'- aUGcGGCUCGu---AGUCUc-----UGUCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 35453 0.66 0.868775
Target:  5'- gGCGCCGguaAGCAUCAGcGACGGuCGc- -3'
miRNA:   3'- aUGCGGC---UCGUAGUCuCUGUCcGCac -5'
24519 3' -56.5 NC_005264.1 + 74830 0.67 0.853474
Target:  5'- aACG-UGGGCAcCAGGGGCAGGCu-- -3'
miRNA:   3'- aUGCgGCUCGUaGUCUCUGUCCGcac -5'
24519 3' -56.5 NC_005264.1 + 147680 0.67 0.853474
Target:  5'- gAUGUCGcucGGuCGUcCAGAGACGGGCGg- -3'
miRNA:   3'- aUGCGGC---UC-GUA-GUCUCUGUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 45226 0.67 0.845518
Target:  5'- aACGCCGAGCG-CAGcguAGGCAuGGCc-- -3'
miRNA:   3'- aUGCGGCUCGUaGUC---UCUGU-CCGcac -5'
24519 3' -56.5 NC_005264.1 + 112568 0.67 0.837366
Target:  5'- cUACGCaCGAGCAacUCGGAaucgccgccgcGGCAGGUGc- -3'
miRNA:   3'- -AUGCG-GCUCGU--AGUCU-----------CUGUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 19426 0.67 0.837366
Target:  5'- gGCGCCGGGUGUggccgCGGGGcGCGGGUGg- -3'
miRNA:   3'- aUGCGGCUCGUA-----GUCUC-UGUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 534 0.67 0.820507
Target:  5'- -cCGCCGAGCAcccagccaUCcggaAGAGACGGcGaCGUGg -3'
miRNA:   3'- auGCGGCUCGU--------AG----UCUCUGUC-C-GCAC- -5'
24519 3' -56.5 NC_005264.1 + 31191 0.67 0.820507
Target:  5'- gGCGgCGGGCAcCGcAGACcgAGGCGUGa -3'
miRNA:   3'- aUGCgGCUCGUaGUcUCUG--UCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 137815 0.67 0.811815
Target:  5'- cUugGCCGGGCGccUCAG-GAgAGGCa-- -3'
miRNA:   3'- -AugCGGCUCGU--AGUCuCUgUCCGcac -5'
24519 3' -56.5 NC_005264.1 + 136453 0.67 0.811815
Target:  5'- gGCGCUGAggccGCGcUCAGAGAC-GGCGc- -3'
miRNA:   3'- aUGCGGCU----CGU-AGUCUCUGuCCGCac -5'
24519 3' -56.5 NC_005264.1 + 31459 0.68 0.802959
Target:  5'- gACGa-GAGCGUCGccGAUGGGCGUGg -3'
miRNA:   3'- aUGCggCUCGUAGUcuCUGUCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 110132 0.68 0.802959
Target:  5'- -cCGCCGcGCuuUUGGGGGCGGGCGg- -3'
miRNA:   3'- auGCGGCuCGu-AGUCUCUGUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 116769 0.68 0.802959
Target:  5'- cUACGCCGGGaa-CAGAGuuucugacggaACAGGCGa- -3'
miRNA:   3'- -AUGCGGCUCguaGUCUC-----------UGUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 150486 0.68 0.802959
Target:  5'- gACGa-GAGCGUCGccGAUGGGCGUGg -3'
miRNA:   3'- aUGCggCUCGUAGUcuCUGUCCGCAC- -5'
24519 3' -56.5 NC_005264.1 + 20351 0.69 0.746861
Target:  5'- cGCGCCGugccAGCGUCGuGGGAgAGGUGa- -3'
miRNA:   3'- aUGCGGC----UCGUAGU-CUCUgUCCGCac -5'
24519 3' -56.5 NC_005264.1 + 18147 0.69 0.737102
Target:  5'- gGCG-CGAGCGgcuaAGAGACAGGCuUGu -3'
miRNA:   3'- aUGCgGCUCGUag--UCUCUGUCCGcAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.