miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24521 3' -57.7 NC_005264.1 + 118543 0.66 0.855948
Target:  5'- cGCACCAcgcuucucUCC-CGCUCGgugaucucauccgcgCGGCguGACGCg -3'
miRNA:   3'- -CGUGGU--------AGGuGCGGGUa--------------GCCG--CUGCG- -5'
24521 3' -57.7 NC_005264.1 + 49911 0.66 0.855191
Target:  5'- cGCGCCcaaAUCC-CGCUgG-CGGCGACu- -3'
miRNA:   3'- -CGUGG---UAGGuGCGGgUaGCCGCUGcg -5'
24521 3' -57.7 NC_005264.1 + 68043 0.66 0.877057
Target:  5'- -aACCGcuUCCGUGCCCGacgaGGCGGCGa -3'
miRNA:   3'- cgUGGU--AGGUGCGGGUag--CCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 7441 0.66 0.855191
Target:  5'- uCGCUAUCgAUGUCCAUCugagGGUccGGCGCg -3'
miRNA:   3'- cGUGGUAGgUGCGGGUAG----CCG--CUGCG- -5'
24521 3' -57.7 NC_005264.1 + 103049 0.66 0.869969
Target:  5'- uGCGCUA--CGCGCCCccugCgGGCGACGa -3'
miRNA:   3'- -CGUGGUagGUGCGGGua--G-CCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 42048 0.66 0.861938
Target:  5'- gGC-CUAUCCAaucgcguUGCCCG-CGGCG-CGUg -3'
miRNA:   3'- -CGuGGUAGGU-------GCGGGUaGCCGCuGCG- -5'
24521 3' -57.7 NC_005264.1 + 142583 0.66 0.855191
Target:  5'- cGCACCGUCCccugaAUGCCgG-CcGCGACGa -3'
miRNA:   3'- -CGUGGUAGG-----UGCGGgUaGcCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 69336 0.66 0.869969
Target:  5'- aGUugCGUgaaccucgacUCugGCCCGUUuGUGGCGCg -3'
miRNA:   3'- -CGugGUA----------GGugCGGGUAGcCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 132824 0.66 0.869969
Target:  5'- -aACC-UCCGCaGCaCAUCuGCGGCGCu -3'
miRNA:   3'- cgUGGuAGGUG-CGgGUAGcCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 6664 0.66 0.862679
Target:  5'- gGCGCCG-CCACGCCgCAaa-GCcGCGCa -3'
miRNA:   3'- -CGUGGUaGGUGCGG-GUagcCGcUGCG- -5'
24521 3' -57.7 NC_005264.1 + 154767 0.66 0.869969
Target:  5'- aCGCCGcCCGUGCCCGacugCGGCcgcGACGUg -3'
miRNA:   3'- cGUGGUaGGUGCGGGUa---GCCG---CUGCG- -5'
24521 3' -57.7 NC_005264.1 + 142723 0.66 0.869969
Target:  5'- cGCAUCGUCgACuaCCuaAUCGGCuauACGCg -3'
miRNA:   3'- -CGUGGUAGgUGcgGG--UAGCCGc--UGCG- -5'
24521 3' -57.7 NC_005264.1 + 123188 0.66 0.862679
Target:  5'- -uGCCGcCCACGCCg--CGGUGugGg -3'
miRNA:   3'- cgUGGUaGGUGCGGguaGCCGCugCg -5'
24521 3' -57.7 NC_005264.1 + 27991 0.66 0.852907
Target:  5'- cCGCCGUagCCGCgGCCCAucgauccaggucggUCGGgGGCGg -3'
miRNA:   3'- cGUGGUA--GGUG-CGGGU--------------AGCCgCUGCg -5'
24521 3' -57.7 NC_005264.1 + 53957 0.66 0.867803
Target:  5'- cGCACCAcauggcgucacuuaUUgGCGCCgGaaCGGCGGCGa -3'
miRNA:   3'- -CGUGGU--------------AGgUGCGGgUa-GCCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 69273 0.66 0.877057
Target:  5'- gGCGCCAugauUUUACGCCCcuguggacucugAUgGGCGcuaaaACGCa -3'
miRNA:   3'- -CGUGGU----AGGUGCGGG------------UAgCCGC-----UGCG- -5'
24521 3' -57.7 NC_005264.1 + 116560 0.66 0.862679
Target:  5'- gGCGgCGUCgAUGCgCAgcUCGGCGACc- -3'
miRNA:   3'- -CGUgGUAGgUGCGgGU--AGCCGCUGcg -5'
24521 3' -57.7 NC_005264.1 + 41061 0.66 0.875655
Target:  5'- gGCGCCguccuugggucauguGUCCAUaucuccuagacuaggGCCuCGagGGCGGCGCc -3'
miRNA:   3'- -CGUGG---------------UAGGUG---------------CGG-GUagCCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 152536 0.66 0.855191
Target:  5'- uGCGCgUcgCUGCGCCCGguaGGCGA-GCu -3'
miRNA:   3'- -CGUG-GuaGGUGCGGGUag-CCGCUgCG- -5'
24521 3' -57.7 NC_005264.1 + 26112 0.66 0.869969
Target:  5'- -gGCCA-CCGCGCggcUCGUgGcGCGGCGCc -3'
miRNA:   3'- cgUGGUaGGUGCG---GGUAgC-CGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.