miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24521 3' -57.7 NC_005264.1 + 81 0.69 0.704446
Target:  5'- aGCACC--UCGCaCUUAUCGGCGcACGCg -3'
miRNA:   3'- -CGUGGuaGGUGcGGGUAGCCGC-UGCG- -5'
24521 3' -57.7 NC_005264.1 + 1520 0.7 0.674929
Target:  5'- uGCGCCGUUUuuugGgGCCCcgCGGCGuugacCGCg -3'
miRNA:   3'- -CGUGGUAGG----UgCGGGuaGCCGCu----GCG- -5'
24521 3' -57.7 NC_005264.1 + 2849 0.66 0.883258
Target:  5'- cGCGCUcgcgCCGuCGCCCGcugCGGCugcgaucgaccggGGCGCg -3'
miRNA:   3'- -CGUGGua--GGU-GCGGGUa--GCCG-------------CUGCG- -5'
24521 3' -57.7 NC_005264.1 + 3276 0.72 0.565694
Target:  5'- cGCAgCG-CCACGUCCcUgGGCGACGg -3'
miRNA:   3'- -CGUgGUaGGUGCGGGuAgCCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 3432 0.7 0.654076
Target:  5'- cGCGCCccacuucucagggGUCCGcCGCCCGUggcgccCGGUGcCGCa -3'
miRNA:   3'- -CGUGG-------------UAGGU-GCGGGUA------GCCGCuGCG- -5'
24521 3' -57.7 NC_005264.1 + 3519 0.78 0.282404
Target:  5'- uCGCCGUCCGC-CUCGUCGaaccGCGACGCg -3'
miRNA:   3'- cGUGGUAGGUGcGGGUAGC----CGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 3659 0.7 0.684812
Target:  5'- cCGCCGUCUcgacgauggGCGgCCGucUCGGCGGCGa -3'
miRNA:   3'- cGUGGUAGG---------UGCgGGU--AGCCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 4161 0.66 0.862679
Target:  5'- -uGCCGcCCACGCCg--CGGUGugGg -3'
miRNA:   3'- cgUGGUaGGUGCGGguaGCCGCugCg -5'
24521 3' -57.7 NC_005264.1 + 4594 0.68 0.752367
Target:  5'- -gGCCcUCCcCGCCagcgccgCGGCGGCGUa -3'
miRNA:   3'- cgUGGuAGGuGCGGgua----GCCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 5259 0.67 0.823387
Target:  5'- aGCGCCGggaggcgagUCGCGgCCGgaCGGCGGgGCg -3'
miRNA:   3'- -CGUGGUa--------GGUGCgGGUa-GCCGCUgCG- -5'
24521 3' -57.7 NC_005264.1 + 5569 0.68 0.770893
Target:  5'- aGCACCGcggacagcgCCugGCUCAguuccuccagaUCGGCGAC-Cg -3'
miRNA:   3'- -CGUGGUa--------GGugCGGGU-----------AGCCGCUGcG- -5'
24521 3' -57.7 NC_005264.1 + 5791 0.71 0.594326
Target:  5'- uGCACCA-CCgagGCGCCCAcggcguucaauagUcCGGCGGCGg -3'
miRNA:   3'- -CGUGGUaGG---UGCGGGU-------------A-GCCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 5929 0.67 0.839647
Target:  5'- gGCGCUAUcuaaCCACgGCCCGaacccgCGGCGuuGCc -3'
miRNA:   3'- -CGUGGUA----GGUG-CGGGUa-----GCCGCugCG- -5'
24521 3' -57.7 NC_005264.1 + 6440 0.7 0.674929
Target:  5'- gGCGgCGUCgCugGCggagaacuCC-UCGGCGGCGCg -3'
miRNA:   3'- -CGUgGUAG-GugCG--------GGuAGCCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 6561 0.67 0.815006
Target:  5'- aGCGCCu----CGUCCA-CGGUGAUGCg -3'
miRNA:   3'- -CGUGGuagguGCGGGUaGCCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 6664 0.66 0.862679
Target:  5'- gGCGCCG-CCACGCCgCAaa-GCcGCGCa -3'
miRNA:   3'- -CGUGGUaGGUGCGG-GUagcCGcUGCG- -5'
24521 3' -57.7 NC_005264.1 + 7441 0.66 0.855191
Target:  5'- uCGCUAUCgAUGUCCAUCugagGGUccGGCGCg -3'
miRNA:   3'- cGUGGUAGgUGCGGGUAG----CCG--CUGCG- -5'
24521 3' -57.7 NC_005264.1 + 7871 0.69 0.71418
Target:  5'- gGCGgCGUCgGCGCCCcagaugCGGCGuCGg -3'
miRNA:   3'- -CGUgGUAGgUGCGGGua----GCCGCuGCg -5'
24521 3' -57.7 NC_005264.1 + 7941 0.71 0.595318
Target:  5'- cGCGUCGUCCACGgCCG-CGGCGucuuuguCGCu -3'
miRNA:   3'- -CGUGGUAGGUGCgGGUaGCCGCu------GCG- -5'
24521 3' -57.7 NC_005264.1 + 8282 0.75 0.400713
Target:  5'- aCGCCAaCaagGCGCCCGUgGGCGACGg -3'
miRNA:   3'- cGUGGUaGg--UGCGGGUAgCCGCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.