miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24521 3' -57.7 NC_005264.1 + 136453 0.73 0.479763
Target:  5'- gGCGCUGaggCCGCGCUCAgagaCGGCGcCGCg -3'
miRNA:   3'- -CGUGGUa--GGUGCGGGUa---GCCGCuGCG- -5'
24521 3' -57.7 NC_005264.1 + 133594 0.75 0.395743
Target:  5'- cGCGCCGcagucuccgcugugcUCCuCGaccgcuggcucCCCAUCGGUGACGCa -3'
miRNA:   3'- -CGUGGU---------------AGGuGC-----------GGGUAGCCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 127309 0.75 0.400713
Target:  5'- aCGCCAaCaagGCGCCCGUgGGCGACGg -3'
miRNA:   3'- cGUGGUaGg--UGCGGGUAgCCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 67378 0.75 0.409085
Target:  5'- cGCGCUcgCUGCGCCCGcCGGCGcgguaGCGUa -3'
miRNA:   3'- -CGUGGuaGGUGCGGGUaGCCGC-----UGCG- -5'
24521 3' -57.7 NC_005264.1 + 146930 0.74 0.451631
Target:  5'- cGCACaccuacaCGUCCcUGCCgGUCGGCGGCGa -3'
miRNA:   3'- -CGUG-------GUAGGuGCGGgUAGCCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 159048 0.74 0.452524
Target:  5'- cGgACCG-CCACGCagAUCGGCGGCGg -3'
miRNA:   3'- -CgUGGUaGGUGCGggUAGCCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 17350 0.74 0.470592
Target:  5'- aGUGCCuUCCGCGgCagcuggCGGCGGCGCg -3'
miRNA:   3'- -CGUGGuAGGUGCgGgua---GCCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 52937 0.74 0.470592
Target:  5'- uGCAUgG-CCGCGCCCG-CGGCGcauuGCGCc -3'
miRNA:   3'- -CGUGgUaGGUGCGGGUaGCCGC----UGCG- -5'
24521 3' -57.7 NC_005264.1 + 152375 0.74 0.470592
Target:  5'- -gACCGggaUCCG-GCCUAUCGGCGGCGa -3'
miRNA:   3'- cgUGGU---AGGUgCGGGUAGCCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 8757 0.75 0.376265
Target:  5'- aGCGCCucuUCCAUaugaGCCUcuaCGGCGGCGCg -3'
miRNA:   3'- -CGUGGu--AGGUG----CGGGua-GCCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 149402 0.76 0.345268
Target:  5'- gGCGCCG-CCGCGUCgCGucUCGGCGGCGg -3'
miRNA:   3'- -CGUGGUaGGUGCGG-GU--AGCCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 42121 0.76 0.33781
Target:  5'- gGCACCGUCCucCGCCCGaccgcCGGCuuugucGGCGCg -3'
miRNA:   3'- -CGUGGUAGGu-GCGGGUa----GCCG------CUGCG- -5'
24521 3' -57.7 NC_005264.1 + 152297 0.85 0.106155
Target:  5'- cGCGCgAUCCGCGCCCcuGagGGCGGCGCc -3'
miRNA:   3'- -CGUGgUAGGUGCGGG--UagCCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 79718 0.8 0.197794
Target:  5'- cGCGCC-UCCgcggccuugGCGCCCGUCGGCGuacaccuGCGCu -3'
miRNA:   3'- -CGUGGuAGG---------UGCGGGUAGCCGC-------UGCG- -5'
24521 3' -57.7 NC_005264.1 + 89939 0.79 0.22358
Target:  5'- uCGCuCAUUC-CGCCCAUCGGCGGcCGCu -3'
miRNA:   3'- cGUG-GUAGGuGCGGGUAGCCGCU-GCG- -5'
24521 3' -57.7 NC_005264.1 + 122546 0.78 0.282404
Target:  5'- uCGCCGUCCGC-CUCGUCGaaccGCGACGCg -3'
miRNA:   3'- cGUGGUAGGUGcGGGUAGC----CGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 134885 0.77 0.288261
Target:  5'- cGCACCGUuguuuggaagacgCgGCGCCCGUUGGCGAacUGCu -3'
miRNA:   3'- -CGUGGUA-------------GgUGCGGGUAGCCGCU--GCG- -5'
24521 3' -57.7 NC_005264.1 + 157278 0.77 0.288917
Target:  5'- gGCGCUGUCCGCGgugCUGUCGGUGACGUc -3'
miRNA:   3'- -CGUGGUAGGUGCg--GGUAGCCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 30079 0.77 0.304343
Target:  5'- gGCGCCG-CCGCGCCCGgacagaaUCgcgagucgagaugcgGGCGGCGCg -3'
miRNA:   3'- -CGUGGUaGGUGCGGGU-------AG---------------CCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 86747 0.77 0.316147
Target:  5'- cGCGCUGUUCGCGCCCGUagagcCGuCGACGCu -3'
miRNA:   3'- -CGUGGUAGGUGCGGGUA-----GCcGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.