Results 1 - 20 of 301 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24521 | 3' | -57.7 | NC_005264.1 | + | 131372 | 1.13 | 0.001281 |
Target: 5'- cGCACCAUCCACGCCCAUCGGCGACGCu -3' miRNA: 3'- -CGUGGUAGGUGCGGGUAGCCGCUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 12345 | 1.13 | 0.001281 |
Target: 5'- cGCACCAUCCACGCCCAUCGGCGACGCu -3' miRNA: 3'- -CGUGGUAGGUGCGGGUAGCCGCUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 33270 | 0.85 | 0.106155 |
Target: 5'- cGCGCgAUCCGCGCCCcuGagGGCGGCGCc -3' miRNA: 3'- -CGUGgUAGGUGCGGG--UagCCGCUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 152297 | 0.85 | 0.106155 |
Target: 5'- cGCGCgAUCCGCGCCCcuGagGGCGGCGCc -3' miRNA: 3'- -CGUGgUAGGUGCGGG--UagCCGCUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 79718 | 0.8 | 0.197794 |
Target: 5'- cGCGCC-UCCgcggccuugGCGCCCGUCGGCGuacaccuGCGCu -3' miRNA: 3'- -CGUGGuAGG---------UGCGGGUAGCCGC-------UGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 89939 | 0.79 | 0.22358 |
Target: 5'- uCGCuCAUUC-CGCCCAUCGGCGGcCGCu -3' miRNA: 3'- cGUG-GUAGGuGCGGGUAGCCGCU-GCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 122546 | 0.78 | 0.282404 |
Target: 5'- uCGCCGUCCGC-CUCGUCGaaccGCGACGCg -3' miRNA: 3'- cGUGGUAGGUGcGGGUAGC----CGCUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 3519 | 0.78 | 0.282404 |
Target: 5'- uCGCCGUCCGC-CUCGUCGaaccGCGACGCg -3' miRNA: 3'- cGUGGUAGGUGcGGGUAGC----CGCUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 134885 | 0.77 | 0.288261 |
Target: 5'- cGCACCGUuguuuggaagacgCgGCGCCCGUUGGCGAacUGCu -3' miRNA: 3'- -CGUGGUA-------------GgUGCGGGUAGCCGCU--GCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 38251 | 0.77 | 0.288917 |
Target: 5'- gGCGCUGUCCGCGgugCUGUCGGUGACGUc -3' miRNA: 3'- -CGUGGUAGGUGCg--GGUAGCCGCUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 157278 | 0.77 | 0.288917 |
Target: 5'- gGCGCUGUCCGCGgugCUGUCGGUGACGUc -3' miRNA: 3'- -CGUGGUAGGUGCg--GGUAGCCGCUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 118807 | 0.77 | 0.302296 |
Target: 5'- aGCgGCC-UCUACGCCCAaCGGCugGACGCa -3' miRNA: 3'- -CG-UGGuAGGUGCGGGUaGCCG--CUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 30079 | 0.77 | 0.304343 |
Target: 5'- gGCGCCG-CCGCGCCCGgacagaaUCgcgagucgagaugcgGGCGGCGCg -3' miRNA: 3'- -CGUGGUaGGUGCGGGU-------AG---------------CCGCUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 86747 | 0.77 | 0.316147 |
Target: 5'- cGCGCUGUUCGCGCCCGUagagcCGuCGACGCu -3' miRNA: 3'- -CGUGGUAGGUGCGGGUA-----GCcGCUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 42121 | 0.76 | 0.33781 |
Target: 5'- gGCACCGUCCucCGCCCGaccgcCGGCuuugucGGCGCg -3' miRNA: 3'- -CGUGGUAGGu-GCGGGUa----GCCG------CUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 125021 | 0.76 | 0.345268 |
Target: 5'- aCAUUAUCCuCGCaaacuCGUCGGCGGCGCg -3' miRNA: 3'- cGUGGUAGGuGCGg----GUAGCCGCUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 30375 | 0.76 | 0.345268 |
Target: 5'- gGCGCCG-CCGCGUCgCGucUCGGCGGCGg -3' miRNA: 3'- -CGUGGUaGGUGCGG-GU--AGCCGCUGCg -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 149402 | 0.76 | 0.345268 |
Target: 5'- gGCGCCG-CCGCGUCgCGucUCGGCGGCGg -3' miRNA: 3'- -CGUGGUaGGUGCGG-GU--AGCCGCUGCg -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 8757 | 0.75 | 0.376265 |
Target: 5'- aGCGCCucuUCCAUaugaGCCUcuaCGGCGGCGCg -3' miRNA: 3'- -CGUGGu--AGGUG----CGGGua-GCCGCUGCG- -5' |
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24521 | 3' | -57.7 | NC_005264.1 | + | 133594 | 0.75 | 0.395743 |
Target: 5'- cGCGCCGcagucuccgcugugcUCCuCGaccgcuggcucCCCAUCGGUGACGCa -3' miRNA: 3'- -CGUGGU---------------AGGuGC-----------GGGUAGCCGCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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