miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24523 3' -62.9 NC_005264.1 + 41500 0.66 0.666323
Target:  5'- aGCUCGCcaACUCCuccuuaaggugcGGGaGCAGCCCc--- -3'
miRNA:   3'- cCGAGCG--UGAGG------------CCC-CGUCGGGcucc -5'
24523 3' -62.9 NC_005264.1 + 16429 0.66 0.666323
Target:  5'- cGCUCG-ACUgCCgcGGGGCcuGCCCGcGGg -3'
miRNA:   3'- cCGAGCgUGA-GG--CCCCGu-CGGGCuCC- -5'
24523 3' -62.9 NC_005264.1 + 98093 0.66 0.666323
Target:  5'- cGGC-CGC-C-CCGGGGUua-CCGGGGu -3'
miRNA:   3'- -CCGaGCGuGaGGCCCCGucgGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 45128 0.66 0.665363
Target:  5'- uGCUCgGCACgcuaguaUCCGGGGCGgugacGCUCGAc- -3'
miRNA:   3'- cCGAG-CGUG-------AGGCCCCGU-----CGGGCUcc -5'
24523 3' -62.9 NC_005264.1 + 129327 0.66 0.656712
Target:  5'- aGCUCGC-CUaCCGGGcGCAGCgacgcgcaCUGAGc -3'
miRNA:   3'- cCGAGCGuGA-GGCCC-CGUCG--------GGCUCc -5'
24523 3' -62.9 NC_005264.1 + 12747 0.66 0.656712
Target:  5'- cGCUgGCA-UCCuuaacccauGGGGCAGCgCCGGGc -3'
miRNA:   3'- cCGAgCGUgAGG---------CCCCGUCG-GGCUCc -5'
24523 3' -62.9 NC_005264.1 + 122089 0.66 0.656712
Target:  5'- uGGCaCGCugUCUcgccgcgacuGGcGGCGGC-CGAGGa -3'
miRNA:   3'- -CCGaGCGugAGG----------CC-CCGUCGgGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 3062 0.66 0.656712
Target:  5'- uGGCaCGCugUCUcgccgcgacuGGcGGCGGC-CGAGGa -3'
miRNA:   3'- -CCGaGCGugAGG----------CC-CCGUCGgGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 10300 0.66 0.656712
Target:  5'- aGCUCGC-CUaCCGGGcGCAGCgacgcgcaCUGAGc -3'
miRNA:   3'- cCGAGCGuGA-GGCCC-CGUCG--------GGCUCc -5'
24523 3' -62.9 NC_005264.1 + 75482 0.66 0.637443
Target:  5'- uGGCcagUCGCGCguugagacuaCCGGGGCAcGCucgCCGAGc -3'
miRNA:   3'- -CCG---AGCGUGa---------GGCCCCGU-CG---GGCUCc -5'
24523 3' -62.9 NC_005264.1 + 80339 0.66 0.6278
Target:  5'- uGGCUcCGCGCgggUCGGGuCGGUUgGAGGc -3'
miRNA:   3'- -CCGA-GCGUGa--GGCCCcGUCGGgCUCC- -5'
24523 3' -62.9 NC_005264.1 + 43666 0.66 0.61816
Target:  5'- cGGCgcgcUGCGCgCCGGcguuaaGGCGGCCgcCGGGGa -3'
miRNA:   3'- -CCGa---GCGUGaGGCC------CCGUCGG--GCUCC- -5'
24523 3' -62.9 NC_005264.1 + 162692 0.66 0.61816
Target:  5'- cGGCgcgcUGCGCgCCGGcguuaaGGCGGCCgcCGGGGa -3'
miRNA:   3'- -CCGa---GCGUGaGGCC------CCGUCGG--GCUCC- -5'
24523 3' -62.9 NC_005264.1 + 138445 0.66 0.61816
Target:  5'- uGCUCGCgaucuaccucGCcgCCGGGGgAGCCgCGAa- -3'
miRNA:   3'- cCGAGCG----------UGa-GGCCCCgUCGG-GCUcc -5'
24523 3' -62.9 NC_005264.1 + 80568 0.66 0.617197
Target:  5'- cGGCggacccuUCGCGCUCCGGuGCcGCCUGucGc -3'
miRNA:   3'- -CCG-------AGCGUGAGGCCcCGuCGGGCucC- -5'
24523 3' -62.9 NC_005264.1 + 53284 0.67 0.598915
Target:  5'- uGGC-CGCGCgggcuUCgGGGGCAacgggaagucuGCCCaGGGGc -3'
miRNA:   3'- -CCGaGCGUG-----AGgCCCCGU-----------CGGG-CUCC- -5'
24523 3' -62.9 NC_005264.1 + 37914 0.67 0.597954
Target:  5'- gGGCUCGCguaauucGCUCCGuGGUcuuuaugauaGGCCaUGGGGg -3'
miRNA:   3'- -CCGAGCG-------UGAGGCcCCG----------UCGG-GCUCC- -5'
24523 3' -62.9 NC_005264.1 + 123100 0.67 0.593156
Target:  5'- cGCacgUGCGCUCCGGGGgcaucgaguacuacuUGGCCaaCGGGGg -3'
miRNA:   3'- cCGa--GCGUGAGGCCCC---------------GUCGG--GCUCC- -5'
24523 3' -62.9 NC_005264.1 + 126102 0.67 0.589321
Target:  5'- cGGCgccgUCGCGCUgCGGGGaa--CUGAGGu -3'
miRNA:   3'- -CCG----AGCGUGAgGCCCCgucgGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 7075 0.67 0.589321
Target:  5'- cGGCgccgUCGCGCUgCGGGGaa--CUGAGGu -3'
miRNA:   3'- -CCG----AGCGUGAgGCCCCgucgGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.