miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24523 3' -62.9 NC_005264.1 + 3062 0.66 0.656712
Target:  5'- uGGCaCGCugUCUcgccgcgacuGGcGGCGGC-CGAGGa -3'
miRNA:   3'- -CCGaGCGugAGG----------CC-CCGUCGgGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 25640 0.68 0.504861
Target:  5'- gGGC-CGCGCUCCGcGuuuuccucaaucGGCAcGUCUGGGGg -3'
miRNA:   3'- -CCGaGCGUGAGGC-C------------CCGU-CGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 78686 0.69 0.468975
Target:  5'- cGGCgcgCGCGCUgcgaccacuucCCGGGGCucgcgagcuGCCgCGAGa -3'
miRNA:   3'- -CCGa--GCGUGA-----------GGCCCCGu--------CGG-GCUCc -5'
24523 3' -62.9 NC_005264.1 + 11781 1.1 0.000712
Target:  5'- uGGCUCGCACUCCGGGGCAGCCCGAGGc -3'
miRNA:   3'- -CCGAGCGUGAGGCCCCGUCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 53284 0.67 0.598915
Target:  5'- uGGC-CGCGCgggcuUCgGGGGCAacgggaagucuGCCCaGGGGc -3'
miRNA:   3'- -CCGaGCGUG-----AGgCCCCGU-----------CGGG-CUCC- -5'
24523 3' -62.9 NC_005264.1 + 123100 0.67 0.593156
Target:  5'- cGCacgUGCGCUCCGGGGgcaucgaguacuacuUGGCCaaCGGGGg -3'
miRNA:   3'- cCGa--GCGUGAGGCCCC---------------GUCGG--GCUCC- -5'
24523 3' -62.9 NC_005264.1 + 134091 0.67 0.589321
Target:  5'- aGCUagaGCACgUCUGGGcGCAGgCUGAGa -3'
miRNA:   3'- cCGAg--CGUG-AGGCCC-CGUCgGGCUCc -5'
24523 3' -62.9 NC_005264.1 + 96746 0.67 0.570223
Target:  5'- -aCUCGU-UUUCGGGGCAGCCCcccaGAGa -3'
miRNA:   3'- ccGAGCGuGAGGCCCCGUCGGG----CUCc -5'
24523 3' -62.9 NC_005264.1 + 3362 0.67 0.560729
Target:  5'- cGCUC-CGCUCCgucugGGGGCGGC--GAGGg -3'
miRNA:   3'- cCGAGcGUGAGG-----CCCCGUCGggCUCC- -5'
24523 3' -62.9 NC_005264.1 + 22640 0.68 0.511265
Target:  5'- uGGCUCGCcagguauagcaaguGCUUUugGGGGCGGUcgUCGGGGu -3'
miRNA:   3'- -CCGAGCG--------------UGAGG--CCCCGUCG--GGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 91544 0.68 0.541879
Target:  5'- uGCUCGCGCauaUCGGGcGCGGCggggggcaCGAGGc -3'
miRNA:   3'- cCGAGCGUGa--GGCCC-CGUCGg-------GCUCC- -5'
24523 3' -62.9 NC_005264.1 + 6087 0.67 0.560729
Target:  5'- uGGCUCGCGuCguagCGGcGGCAGaCCCGGa- -3'
miRNA:   3'- -CCGAGCGU-Gag--GCC-CCGUC-GGGCUcc -5'
24523 3' -62.9 NC_005264.1 + 10300 0.66 0.656712
Target:  5'- aGCUCGC-CUaCCGGGcGCAGCgacgcgcaCUGAGc -3'
miRNA:   3'- cCGAGCGuGA-GGCCC-CGUCG--------GGCUCc -5'
24523 3' -62.9 NC_005264.1 + 31761 0.68 0.541879
Target:  5'- uGGCUCGCACcgggauggUUCGcGGGCGcuucGCCUaAGGg -3'
miRNA:   3'- -CCGAGCGUG--------AGGC-CCCGU----CGGGcUCC- -5'
24523 3' -62.9 NC_005264.1 + 75482 0.66 0.637443
Target:  5'- uGGCcagUCGCGCguugagacuaCCGGGGCAcGCucgCCGAGc -3'
miRNA:   3'- -CCG---AGCGUGa---------GGCCCCGU-CG---GGCUCc -5'
24523 3' -62.9 NC_005264.1 + 133711 0.67 0.569272
Target:  5'- cGGCcaCGCGCUCCucagguacgccucGGGG-GGUUCGAGGa -3'
miRNA:   3'- -CCGa-GCGUGAGG-------------CCCCgUCGGGCUCC- -5'
24523 3' -62.9 NC_005264.1 + 131977 0.68 0.532533
Target:  5'- gGGCUCGCgACgacaggCCGGuGGCGGUgggCCGAccGGc -3'
miRNA:   3'- -CCGAGCG-UGa-----GGCC-CCGUCG---GGCU--CC- -5'
24523 3' -62.9 NC_005264.1 + 68978 0.68 0.495774
Target:  5'- uGGCUCGCcaGCUuaGcGGGCcaguGGCCCGcGGc -3'
miRNA:   3'- -CCGAGCG--UGAggC-CCCG----UCGGGCuCC- -5'
24523 3' -62.9 NC_005264.1 + 43666 0.66 0.61816
Target:  5'- cGGCgcgcUGCGCgCCGGcguuaaGGCGGCCgcCGGGGa -3'
miRNA:   3'- -CCGa---GCGUGaGGCC------CCGUCGG--GCUCC- -5'
24523 3' -62.9 NC_005264.1 + 7075 0.67 0.589321
Target:  5'- cGGCgccgUCGCGCUgCGGGGaa--CUGAGGu -3'
miRNA:   3'- -CCG----AGCGUGAgGCCCCgucgGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.