Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24526 | 5' | -48 | NC_005264.1 | + | 64183 | 0.66 | 0.99948 |
Target: 5'- -----cCAGCACUggGuCGAGCAGGa- -3' miRNA: 3'- cucuuuGUUGUGGuuU-GCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 153395 | 0.66 | 0.99948 |
Target: 5'- gGGGAAAC--CGCUAAugGuGCAGGa- -3' miRNA: 3'- -CUCUUUGuuGUGGUUugCuCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 109097 | 0.66 | 0.99948 |
Target: 5'- cGAG-GACGGCGCCGgaGACGGGCAc--- -3' miRNA: 3'- -CUCuUUGUUGUGGU--UUGCUCGUccau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 111746 | 0.66 | 0.99948 |
Target: 5'- cAGAccGCAGCACCGGcgaccGCGAaGCAGGc- -3' miRNA: 3'- cUCUu-UGUUGUGGUU-----UGCU-CGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 60198 | 0.66 | 0.99935 |
Target: 5'- ----cACAAUACCAAGCGAGUGcGUAg -3' miRNA: 3'- cucuuUGUUGUGGUUUGCUCGUcCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 159381 | 0.66 | 0.99935 |
Target: 5'- uGGAuGCGGCACCGGgcgccACGGGCGGcGg- -3' miRNA: 3'- cUCUuUGUUGUGGUU-----UGCUCGUC-Cau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 120476 | 0.66 | 0.999194 |
Target: 5'- cGGGAGcCAGCACCGGccaucGCcGGCGGGg- -3' miRNA: 3'- -CUCUUuGUUGUGGUU-----UGcUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 13345 | 0.66 | 0.999194 |
Target: 5'- aGGGAACGGCGCgAAuCGAGCGGc-- -3' miRNA: 3'- cUCUUUGUUGUGgUUuGCUCGUCcau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 1449 | 0.66 | 0.999194 |
Target: 5'- cGGGAGcCAGCACCGGccaucGCcGGCGGGg- -3' miRNA: 3'- -CUCUUuGUUGUGGUU-----UGcUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 86139 | 0.66 | 0.999194 |
Target: 5'- cGAGuuGCGccgcgcuccGCGCCAAGCuGGGCagAGGUAu -3' miRNA: 3'- -CUCuuUGU---------UGUGGUUUG-CUCG--UCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 95296 | 0.66 | 0.999194 |
Target: 5'- aGAGAGACGcCGCCAuACG-GCAGc-- -3' miRNA: 3'- -CUCUUUGUuGUGGUuUGCuCGUCcau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 68462 | 0.66 | 0.999007 |
Target: 5'- cGAGGGACGACACCAcuuCGucGGUgAGGUu -3' miRNA: 3'- -CUCUUUGUUGUGGUuu-GC--UCG-UCCAu -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 19448 | 0.66 | 0.998987 |
Target: 5'- -cGAGGCGcucaucgGCACCAGuauauGCGcGCGGGUAg -3' miRNA: 3'- cuCUUUGU-------UGUGGUU-----UGCuCGUCCAU- -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 95289 | 0.67 | 0.998784 |
Target: 5'- cAGuuACAACACgCAuGCGAGcCAGGa- -3' miRNA: 3'- cUCuuUGUUGUG-GUuUGCUC-GUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 125024 | 0.67 | 0.998784 |
Target: 5'- gGGGAGucguCGGC-CCcGACGGGCGGGg- -3' miRNA: 3'- -CUCUUu---GUUGuGGuUUGCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 5997 | 0.67 | 0.998784 |
Target: 5'- gGGGAGucguCGGC-CCcGACGGGCGGGg- -3' miRNA: 3'- -CUCUUu---GUUGuGGuUUGCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 136533 | 0.67 | 0.998208 |
Target: 5'- cGGAGACGACG-CGGACGAagacGCGGGa- -3' miRNA: 3'- cUCUUUGUUGUgGUUUGCU----CGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 36014 | 0.67 | 0.998208 |
Target: 5'- -cGAGGCGuugccCGCCAAuacucugaGCGAGCGGGa- -3' miRNA: 3'- cuCUUUGUu----GUGGUU--------UGCUCGUCCau -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 92583 | 0.67 | 0.997842 |
Target: 5'- cAGGuuuuACGCCGAcGCGGGCAGGUu -3' miRNA: 3'- cUCUuuguUGUGGUU-UGCUCGUCCAu -5' |
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24526 | 5' | -48 | NC_005264.1 | + | 151010 | 0.68 | 0.996923 |
Target: 5'- -cGAGACGAgACCcuuGAACGAGCuAGGc- -3' miRNA: 3'- cuCUUUGUUgUGG---UUUGCUCG-UCCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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