miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24527 3' -60.8 NC_005264.1 + 158759 0.66 0.743655
Target:  5'- cGCGaCGcCGCCCGUgcaacaGCCcCGCUGuCGGGa -3'
miRNA:   3'- -UGC-GCaGCGGGCG------CGGaGCGAU-GUCU- -5'
24527 3' -60.8 NC_005264.1 + 31571 0.66 0.734264
Target:  5'- gGCGCGUUacCCCGCGCa--GUUACGGc -3'
miRNA:   3'- -UGCGCAGc-GGGCGCGgagCGAUGUCu -5'
24527 3' -60.8 NC_005264.1 + 49202 0.66 0.743655
Target:  5'- aGCGCucaCGCCCGCGCUaccuggaaaCGCgACAGGu -3'
miRNA:   3'- -UGCGca-GCGGGCGCGGa--------GCGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 39733 0.66 0.743655
Target:  5'- cGCGaCGcCGCCCGUgcaacaGCCcCGCUGuCGGGa -3'
miRNA:   3'- -UGC-GCaGCGGGCG------CGGaGCGAU-GUCU- -5'
24527 3' -60.8 NC_005264.1 + 114990 0.66 0.743655
Target:  5'- gGCGCGU-GCCgGCGC-UUGCaaaACAGAa -3'
miRNA:   3'- -UGCGCAgCGGgCGCGgAGCGa--UGUCU- -5'
24527 3' -60.8 NC_005264.1 + 120223 0.66 0.695957
Target:  5'- -aGCGgaccgggCGUCCGCgGCCaUgGCUGCGGGg -3'
miRNA:   3'- ugCGCa------GCGGGCG-CGG-AgCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 7558 0.66 0.695957
Target:  5'- cACGCuacaucaucGUC-CCCGcCGCCUaccccgcgcCGCUGCGGAg -3'
miRNA:   3'- -UGCG---------CAGcGGGC-GCGGA---------GCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 58264 0.66 0.705629
Target:  5'- uACGCuUCgaGCCCGCuGCCUUGg-ACAGAg -3'
miRNA:   3'- -UGCGcAG--CGGGCG-CGGAGCgaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 90322 0.66 0.705629
Target:  5'- gAUGCaaagCGCCaCGCGCCUCucgGC-GCAGAu -3'
miRNA:   3'- -UGCGca--GCGG-GCGCGGAG---CGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 120307 0.66 0.747387
Target:  5'- cGCGCGgaagcugCGCCCaCGCCaCacaucaggccacaguGCUACAGAa -3'
miRNA:   3'- -UGCGCa------GCGGGcGCGGaG---------------CGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 137305 0.66 0.734264
Target:  5'- aGCGCcUUGUCCGCGCCgccuuaugggCGCUugAc- -3'
miRNA:   3'- -UGCGcAGCGGGCGCGGa---------GCGAugUcu -5'
24527 3' -60.8 NC_005264.1 + 34751 0.66 0.715242
Target:  5'- gGCGCGcCGgUCGcCGCUgUCGCUACAcGAa -3'
miRNA:   3'- -UGCGCaGCgGGC-GCGG-AGCGAUGU-CU- -5'
24527 3' -60.8 NC_005264.1 + 59697 0.66 0.695957
Target:  5'- uACGCuuugCGCCgCGCGCCgCGCcgGCGGc -3'
miRNA:   3'- -UGCGca--GCGG-GCGCGGaGCGa-UGUCu -5'
24527 3' -60.8 NC_005264.1 + 25546 0.66 0.715242
Target:  5'- uGC-CGUaCGCCCGCGUCgccgccaaCGCcGCGGAa -3'
miRNA:   3'- -UGcGCA-GCGGGCGCGGa-------GCGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 125175 0.66 0.72479
Target:  5'- cCGCG-CGCCCGuCGCgcaUCGCgUGCAcGAu -3'
miRNA:   3'- uGCGCaGCGGGC-GCGg--AGCG-AUGU-CU- -5'
24527 3' -60.8 NC_005264.1 + 155520 0.66 0.715242
Target:  5'- gACGCGggaUCuCCCGCGgCUCGUUccCAGAg -3'
miRNA:   3'- -UGCGC---AGcGGGCGCgGAGCGAu-GUCU- -5'
24527 3' -60.8 NC_005264.1 + 75260 0.66 0.72479
Target:  5'- cACGCGccguguucguccUCGUCgGCGCUUUGCUgguccgauGCGGAc -3'
miRNA:   3'- -UGCGC------------AGCGGgCGCGGAGCGA--------UGUCU- -5'
24527 3' -60.8 NC_005264.1 + 61837 0.66 0.72479
Target:  5'- -gGC-UCGCCUGCGCCgCG-UACGGGu -3'
miRNA:   3'- ugCGcAGCGGGCGCGGaGCgAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 79646 0.66 0.715242
Target:  5'- aGCGCauaguUCGCgCCGCGCCUgcCGCUgACAa- -3'
miRNA:   3'- -UGCGc----AGCG-GGCGCGGA--GCGA-UGUcu -5'
24527 3' -60.8 NC_005264.1 + 51925 0.66 0.72479
Target:  5'- cCG-GUCGUCCGCGCCgaGCUugGcGAg -3'
miRNA:   3'- uGCgCAGCGGGCGCGGagCGAugU-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.