Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24527 | 3' | -60.8 | NC_005264.1 | + | 128579 | 1.08 | 0.001355 |
Target: 5'- gACGCGUCGCCCGCGCCUCGCUACAGAa -3' miRNA: 3'- -UGCGCAGCGGGCGCGGAGCGAUGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 9552 | 1.08 | 0.001355 |
Target: 5'- gACGCGUCGCCCGCGCCUCGCUACAGAa -3' miRNA: 3'- -UGCGCAGCGGGCGCGGAGCGAUGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 93031 | 0.75 | 0.267965 |
Target: 5'- -gGCGUCGUCCGCGCCgaaugcgUGCUGCu-- -3' miRNA: 3'- ugCGCAGCGGGCGCGGa------GCGAUGucu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 49505 | 0.74 | 0.299972 |
Target: 5'- uGCGCGUCuUCaCGUGCCU-GCUGCAGAg -3' miRNA: 3'- -UGCGCAGcGG-GCGCGGAgCGAUGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 86601 | 0.74 | 0.306717 |
Target: 5'- cACGCgGUCG-UCGCGCCUCGCgACAGc -3' miRNA: 3'- -UGCG-CAGCgGGCGCGGAGCGaUGUCu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 77377 | 0.73 | 0.356408 |
Target: 5'- aGCGCGUCGCCCGUaaggaguuccaggGCCggccCGCaUAUGGAu -3' miRNA: 3'- -UGCGCAGCGGGCG-------------CGGa---GCG-AUGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 8262 | 0.73 | 0.357168 |
Target: 5'- -aGCGgCGCCCuggugucCGCCUCGUUGCAGGc -3' miRNA: 3'- ugCGCaGCGGGc------GCGGAGCGAUGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 121874 | 0.72 | 0.364835 |
Target: 5'- uCGCGcUCGCgCCGuCGCC-CGCUGCGGc -3' miRNA: 3'- uGCGC-AGCG-GGC-GCGGaGCGAUGUCu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 2848 | 0.72 | 0.364835 |
Target: 5'- uCGCGcUCGCgCCGuCGCC-CGCUGCGGc -3' miRNA: 3'- uGCGC-AGCG-GGC-GCGGaGCGAUGUCu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 7066 | 0.72 | 0.372613 |
Target: 5'- gGCGCcg-GCCgGCGCCgucgCGCUGCGGGg -3' miRNA: 3'- -UGCGcagCGGgCGCGGa---GCGAUGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 126093 | 0.72 | 0.372613 |
Target: 5'- gGCGCcg-GCCgGCGCCgucgCGCUGCGGGg -3' miRNA: 3'- -UGCGcagCGGgCGCGGa---GCGAUGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 62481 | 0.72 | 0.380505 |
Target: 5'- uGCGCGUCGUgCGCGCgUCcuCUACGGc -3' miRNA: 3'- -UGCGCAGCGgGCGCGgAGc-GAUGUCu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 26650 | 0.72 | 0.388507 |
Target: 5'- aGCGCGgCGCCgGCGCCgCGCUAgAa- -3' miRNA: 3'- -UGCGCaGCGGgCGCGGaGCGAUgUcu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 136193 | 0.72 | 0.388507 |
Target: 5'- aGCGCGgCGCCgGCGCCgCGCUA-AGGu -3' miRNA: 3'- -UGCGCaGCGGgCGCGGaGCGAUgUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 66613 | 0.72 | 0.396618 |
Target: 5'- cCGCGUUGCCgGCGCCgUCGCggcccgagGCAa- -3' miRNA: 3'- uGCGCAGCGGgCGCGG-AGCGa-------UGUcu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 20151 | 0.71 | 0.413165 |
Target: 5'- gGCGCGcCGCCgGCGCCcaagaUCGCgGCAcGAc -3' miRNA: 3'- -UGCGCaGCGGgCGCGG-----AGCGaUGU-CU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 124013 | 0.71 | 0.427559 |
Target: 5'- cCGCGcaucgucgucguucUCGUCCGCGCCggggUCGCcGCGGAg -3' miRNA: 3'- uGCGC--------------AGCGGGCGCGG----AGCGaUGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 62847 | 0.71 | 0.43013 |
Target: 5'- cCGCGUCGCguuUCGuCGCCUCGUccACAGGc -3' miRNA: 3'- uGCGCAGCG---GGC-GCGGAGCGa-UGUCU- -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 67367 | 0.71 | 0.43013 |
Target: 5'- aACGUagCGCCCGCG-CUCGCUGCGc- -3' miRNA: 3'- -UGCGcaGCGGGCGCgGAGCGAUGUcu -5' |
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24527 | 3' | -60.8 | NC_005264.1 | + | 106248 | 0.71 | 0.447498 |
Target: 5'- uCGCGaggCGCUCGCGCCU-GCUgacgGCGGAu -3' miRNA: 3'- uGCGCa--GCGGGCGCGGAgCGA----UGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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