miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24527 3' -60.8 NC_005264.1 + 135575 0.69 0.539554
Target:  5'- cGCGCGUCGCUCGCGa----CUACGGGu -3'
miRNA:   3'- -UGCGCAGCGGGCGCggagcGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 51110 0.7 0.47426
Target:  5'- uGCG-GUCuGCUCGCGCCUCGaCgcugGCGGGc -3'
miRNA:   3'- -UGCgCAG-CGGGCGCGGAGC-Ga---UGUCU- -5'
24527 3' -60.8 NC_005264.1 + 66846 0.7 0.501799
Target:  5'- gACGcCGUCGCCCGaCGCgaaauagaUCGCgcGCGGAg -3'
miRNA:   3'- -UGC-GCAGCGGGC-GCGg-------AGCGa-UGUCU- -5'
24527 3' -60.8 NC_005264.1 + 7939 0.7 0.501799
Target:  5'- cACGCGUCGUCCacggccgcgGCGUCuuugUCGCUGCcuAGAg -3'
miRNA:   3'- -UGCGCAGCGGG---------CGCGG----AGCGAUG--UCU- -5'
24527 3' -60.8 NC_005264.1 + 56982 0.7 0.510198
Target:  5'- cCuCGUCGCCCGCGCucgCUUGCUuucgucaucugcaGCGGAg -3'
miRNA:   3'- uGcGCAGCGGGCGCG---GAGCGA-------------UGUCU- -5'
24527 3' -60.8 NC_005264.1 + 39185 0.69 0.520542
Target:  5'- cGCGCGacUCuaCCGCGCaUCGCUuCAGAg -3'
miRNA:   3'- -UGCGC--AGcgGGCGCGgAGCGAuGUCU- -5'
24527 3' -60.8 NC_005264.1 + 44304 0.69 0.520542
Target:  5'- uGCGCGuaguaUCGCCCGauaGCCcUGCguugACAGAc -3'
miRNA:   3'- -UGCGC-----AGCGGGCg--CGGaGCGa---UGUCU- -5'
24527 3' -60.8 NC_005264.1 + 153163 0.69 0.520542
Target:  5'- gGCGCGa-GCCCGCcucccccaagGCCUCGCUAgAcGAu -3'
miRNA:   3'- -UGCGCagCGGGCG----------CGGAGCGAUgU-CU- -5'
24527 3' -60.8 NC_005264.1 + 33241 0.69 0.539554
Target:  5'- -aGCuUCGCcgCCGCGCCgcagCGCcUGCAGAg -3'
miRNA:   3'- ugCGcAGCG--GGCGCGGa---GCG-AUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 106248 0.71 0.447498
Target:  5'- uCGCGaggCGCUCGCGCCU-GCUgacgGCGGAu -3'
miRNA:   3'- uGCGCa--GCGGGCGCGGAgCGA----UGUCU- -5'
24527 3' -60.8 NC_005264.1 + 62847 0.71 0.43013
Target:  5'- cCGCGUCGCguuUCGuCGCCUCGUccACAGGc -3'
miRNA:   3'- uGCGCAGCG---GGC-GCGGAGCGa-UGUCU- -5'
24527 3' -60.8 NC_005264.1 + 67367 0.71 0.43013
Target:  5'- aACGUagCGCCCGCG-CUCGCUGCGc- -3'
miRNA:   3'- -UGCGcaGCGGGCGCgGAGCGAUGUcu -5'
24527 3' -60.8 NC_005264.1 + 49505 0.74 0.299972
Target:  5'- uGCGCGUCuUCaCGUGCCU-GCUGCAGAg -3'
miRNA:   3'- -UGCGCAGcGG-GCGCGGAgCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 8262 0.73 0.357168
Target:  5'- -aGCGgCGCCCuggugucCGCCUCGUUGCAGGc -3'
miRNA:   3'- ugCGCaGCGGGc------GCGGAGCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 121874 0.72 0.364835
Target:  5'- uCGCGcUCGCgCCGuCGCC-CGCUGCGGc -3'
miRNA:   3'- uGCGC-AGCG-GGC-GCGGaGCGAUGUCu -5'
24527 3' -60.8 NC_005264.1 + 126093 0.72 0.372613
Target:  5'- gGCGCcg-GCCgGCGCCgucgCGCUGCGGGg -3'
miRNA:   3'- -UGCGcagCGGgCGCGGa---GCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 62481 0.72 0.380505
Target:  5'- uGCGCGUCGUgCGCGCgUCcuCUACGGc -3'
miRNA:   3'- -UGCGCAGCGgGCGCGgAGc-GAUGUCu -5'
24527 3' -60.8 NC_005264.1 + 26650 0.72 0.388507
Target:  5'- aGCGCGgCGCCgGCGCCgCGCUAgAa- -3'
miRNA:   3'- -UGCGCaGCGGgCGCGGaGCGAUgUcu -5'
24527 3' -60.8 NC_005264.1 + 66613 0.72 0.396618
Target:  5'- cCGCGUUGCCgGCGCCgUCGCggcccgagGCAa- -3'
miRNA:   3'- uGCGCAGCGGgCGCGG-AGCGa-------UGUcu -5'
24527 3' -60.8 NC_005264.1 + 124013 0.71 0.427559
Target:  5'- cCGCGcaucgucgucguucUCGUCCGCGCCggggUCGCcGCGGAg -3'
miRNA:   3'- uGCGC--------------AGCGGGCGCGG----AGCGaUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.