miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24527 3' -60.8 NC_005264.1 + 1196 0.66 0.695957
Target:  5'- -aGCGgaccgggCGUCCGCgGCCaUgGCUGCGGGg -3'
miRNA:   3'- ugCGCa------GCGGGCG-CGG-AgCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 2758 0.69 0.549148
Target:  5'- gGCGCGUCcCCCgGCGCCguacCGuCUGgGGAg -3'
miRNA:   3'- -UGCGCAGcGGG-CGCGGa---GC-GAUgUCU- -5'
24527 3' -60.8 NC_005264.1 + 2848 0.72 0.364835
Target:  5'- uCGCGcUCGCgCCGuCGCC-CGCUGCGGc -3'
miRNA:   3'- uGCGC-AGCG-GGC-GCGGaGCGAUGUCu -5'
24527 3' -60.8 NC_005264.1 + 4996 0.68 0.607619
Target:  5'- uCGuCGuucUCGUCCGCGCCggggUCGCcGCGGAg -3'
miRNA:   3'- uGC-GC---AGCGGGCGCGG----AGCGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 6148 0.66 0.72479
Target:  5'- cCGCG-CGCCCGuCGCgcaUCGCgUGCAcGAu -3'
miRNA:   3'- uGCGCaGCGGGC-GCGg--AGCG-AUGU-CU- -5'
24527 3' -60.8 NC_005264.1 + 7066 0.72 0.372613
Target:  5'- gGCGCcg-GCCgGCGCCgucgCGCUGCGGGg -3'
miRNA:   3'- -UGCGcagCGGgCGCGGa---GCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 7558 0.66 0.695957
Target:  5'- cACGCuacaucaucGUC-CCCGcCGCCUaccccgcgcCGCUGCGGAg -3'
miRNA:   3'- -UGCG---------CAGcGGGC-GCGGA---------GCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 7939 0.7 0.501799
Target:  5'- cACGCGUCGUCCacggccgcgGCGUCuuugUCGCUGCcuAGAg -3'
miRNA:   3'- -UGCGCAGCGGG---------CGCGG----AGCGAUG--UCU- -5'
24527 3' -60.8 NC_005264.1 + 8262 0.73 0.357168
Target:  5'- -aGCGgCGCCCuggugucCGCCUCGUUGCAGGc -3'
miRNA:   3'- ugCGCaGCGGGc------GCGGAGCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 9030 0.69 0.549148
Target:  5'- cCGaCG-CGUUCGCGCCUgGCUugGGGa -3'
miRNA:   3'- uGC-GCaGCGGGCGCGGAgCGAugUCU- -5'
24527 3' -60.8 NC_005264.1 + 9552 1.08 0.001355
Target:  5'- gACGCGUCGCCCGCGCCUCGCUACAGAa -3'
miRNA:   3'- -UGCGCAGCGGGCGCGGAGCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 20151 0.71 0.413165
Target:  5'- gGCGCGcCGCCgGCGCCcaagaUCGCgGCAcGAc -3'
miRNA:   3'- -UGCGCaGCGGgCGCGG-----AGCGaUGU-CU- -5'
24527 3' -60.8 NC_005264.1 + 25546 0.66 0.715242
Target:  5'- uGC-CGUaCGCCCGCGUCgccgccaaCGCcGCGGAa -3'
miRNA:   3'- -UGcGCA-GCGGGCGCGGa-------GCGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 26650 0.72 0.388507
Target:  5'- aGCGCGgCGCCgGCGCCgCGCUAgAa- -3'
miRNA:   3'- -UGCGCaGCGGgCGCGGaGCGAUgUcu -5'
24527 3' -60.8 NC_005264.1 + 30862 0.67 0.656857
Target:  5'- gGCGCGcCGCCCgguaggcaacgGCGUCUCGau-CGGGg -3'
miRNA:   3'- -UGCGCaGCGGG-----------CGCGGAGCgauGUCU- -5'
24527 3' -60.8 NC_005264.1 + 31571 0.66 0.734264
Target:  5'- gGCGCGUUacCCCGCGCa--GUUACGGc -3'
miRNA:   3'- -UGCGCAGc-GGGCGCGgagCGAUGUCu -5'
24527 3' -60.8 NC_005264.1 + 32290 0.69 0.558794
Target:  5'- uGCGCGUagcacacgCGCCgCGaCGCUUCGC-GCAGGu -3'
miRNA:   3'- -UGCGCA--------GCGG-GC-GCGGAGCGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 33241 0.69 0.539554
Target:  5'- -aGCuUCGCcgCCGCGCCgcagCGCcUGCAGAg -3'
miRNA:   3'- ugCGcAGCG--GGCGCGGa---GCG-AUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 34136 0.69 0.520542
Target:  5'- gGCGCGa-GCCCGCcucccccaagGCCUCGCUAgAcGAu -3'
miRNA:   3'- -UGCGCagCGGGCG----------CGGAGCGAUgU-CU- -5'
24527 3' -60.8 NC_005264.1 + 34751 0.66 0.715242
Target:  5'- gGCGCGcCGgUCGcCGCUgUCGCUACAcGAa -3'
miRNA:   3'- -UGCGCaGCgGGC-GCGG-AGCGAUGU-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.