miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24546 3' -53.8 NC_005264.1 + 158293 0.7 0.865125
Target:  5'- --cGCu--GCCCGC-CGAGCCggcGUCCg -3'
miRNA:   3'- gcaCGuauUGGGCGcGCUUGGa--CAGG- -5'
24546 3' -53.8 NC_005264.1 + 113617 0.69 0.879753
Target:  5'- uCGUGCAUGACCUGuCGCGuuuCCagGUa- -3'
miRNA:   3'- -GCACGUAUUGGGC-GCGCuu-GGa-CAgg -5'
24546 3' -53.8 NC_005264.1 + 90299 0.69 0.900026
Target:  5'- --cGCAc-GCCaCGCgguacacuucgGCGGGCCUGUCCg -3'
miRNA:   3'- gcaCGUauUGG-GCG-----------CGCUUGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 79147 0.69 0.906323
Target:  5'- cCGUGCcgAACuUCGCGCacACCUG-CCu -3'
miRNA:   3'- -GCACGuaUUG-GGCGCGcuUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 96843 0.68 0.912384
Target:  5'- gGUGCGcUAACgCCGCGCgcgacgguuuuGAACUUG-CCg -3'
miRNA:   3'- gCACGU-AUUG-GGCGCG-----------CUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 22853 0.68 0.918208
Target:  5'- aCGgGCG-AGgCCGCGCGAACCUaUCg -3'
miRNA:   3'- -GCaCGUaUUgGGCGCGCUUGGAcAGg -5'
24546 3' -53.8 NC_005264.1 + 39639 0.68 0.918208
Target:  5'- uGUGguUuugCCGCGCG-GCCUcGUCCa -3'
miRNA:   3'- gCACguAuugGGCGCGCuUGGA-CAGG- -5'
24546 3' -53.8 NC_005264.1 + 63166 0.68 0.922143
Target:  5'- --gGCAUGAacccugCCGCGUGGGCCccgaaaagcuggaaUGUCCa -3'
miRNA:   3'- gcaCGUAUUg-----GGCGCGCUUGG--------------ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 128993 0.68 0.929139
Target:  5'- -cUGCcgGACCCGUGCGGcgauGCCgaGcCCa -3'
miRNA:   3'- gcACGuaUUGGGCGCGCU----UGGa-CaGG- -5'
24546 3' -53.8 NC_005264.1 + 80517 0.68 0.929139
Target:  5'- ------cGACCCGCGCGgAGCCauUGUCUg -3'
miRNA:   3'- gcacguaUUGGGCGCGC-UUGG--ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 60809 0.68 0.934244
Target:  5'- -cUGCugcuCCUGCGCGAGCCggcugCCg -3'
miRNA:   3'- gcACGuauuGGGCGCGCUUGGaca--GG- -5'
24546 3' -53.8 NC_005264.1 + 58368 0.68 0.934244
Target:  5'- --gGCGgGGCCgGCGCGAuaugcGCCggauUGUCCa -3'
miRNA:   3'- gcaCGUaUUGGgCGCGCU-----UGG----ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 105851 0.68 0.939111
Target:  5'- uCGUGCAUGGCCC-UGUucGCCgUGUUCc -3'
miRNA:   3'- -GCACGUAUUGGGcGCGcuUGG-ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 5943 0.68 0.939111
Target:  5'- aCG-GCccgAACCCGCgGCGuuGCCUGUUg -3'
miRNA:   3'- -GCaCGua-UUGGGCG-CGCu-UGGACAGg -5'
24546 3' -53.8 NC_005264.1 + 121420 0.68 0.939111
Target:  5'- --cGCAggAGCCCgGCGCcGGCCUG-CCu -3'
miRNA:   3'- gcaCGUa-UUGGG-CGCGcUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 160633 0.68 0.939111
Target:  5'- --cGCAggAGCCCgGCGCcGGCCUG-CCu -3'
miRNA:   3'- gcaCGUa-UUGGG-CGCGcUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 134904 0.68 0.939111
Target:  5'- --cGCGgcGCCCGUugGCGAACUgcucGUCCc -3'
miRNA:   3'- gcaCGUauUGGGCG--CGCUUGGa---CAGG- -5'
24546 3' -53.8 NC_005264.1 + 65628 0.67 0.94374
Target:  5'- uCGUGgGU-ACCCGCGCGcgcACCgGUaaCCa -3'
miRNA:   3'- -GCACgUAuUGGGCGCGCu--UGGaCA--GG- -5'
24546 3' -53.8 NC_005264.1 + 111040 0.67 0.94374
Target:  5'- --aGCgGUGGCUCGCGCGGACUcG-CCg -3'
miRNA:   3'- gcaCG-UAUUGGGCGCGCUUGGaCaGG- -5'
24546 3' -53.8 NC_005264.1 + 666 0.67 0.94374
Target:  5'- --aGCGaugAGCCUGaCGgGAGCCUGcCCg -3'
miRNA:   3'- gcaCGUa--UUGGGC-GCgCUUGGACaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.