Results 1 - 20 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24550 | 5' | -56.5 | NC_005264.1 | + | 80630 | 0.66 | 0.920826 |
Target: 5'- aCGCGAugcuGGCGCcgcuaccGUCUAauACgAUGGCCg -3' miRNA: 3'- -GCGCU----CCGCGa------UAGAU--UGgUGCCGGg -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 71603 | 0.66 | 0.908742 |
Target: 5'- gGCaccGGCGgaGUCUGugucauaGCCACGGgCCu -3' miRNA: 3'- gCGcu-CCGCgaUAGAU-------UGGUGCCgGG- -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 59208 | 0.66 | 0.903252 |
Target: 5'- cCGCGGGGCuugcGCUcgauucgCUGAgcgccaagcuUCugGGCCCg -3' miRNA: 3'- -GCGCUCCG----CGAua-----GAUU----------GGugCCGGG- -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 35476 | 0.66 | 0.903252 |
Target: 5'- aGCGucGUGaacaGUCagGACCACGGCCg -3' miRNA: 3'- gCGCucCGCga--UAGa-UUGGUGCCGGg -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 30427 | 0.66 | 0.903252 |
Target: 5'- aGCGuGGCaccGCUuugccgcgCUGGCCGCGGaaaCCu -3' miRNA: 3'- gCGCuCCG---CGAua------GAUUGGUGCCg--GG- -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 125825 | 0.66 | 0.902631 |
Target: 5'- cCGUGGGcauaauuucccacGCGCUcgCcguUGACCuguCGGCCCc -3' miRNA: 3'- -GCGCUC-------------CGCGAuaG---AUUGGu--GCCGGG- -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 3604 | 0.66 | 0.89949 |
Target: 5'- aGUGGGGCGCgccgccuuCCAUGGUCg -3' miRNA: 3'- gCGCUCCGCGauagauu-GGUGCCGGg -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 28018 | 0.66 | 0.896936 |
Target: 5'- cCGCGAcaguGGCGCgAUCUAgGCCaAUGGCg- -3' miRNA: 3'- -GCGCU----CCGCGaUAGAU-UGG-UGCCGgg -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 86610 | 0.66 | 0.896936 |
Target: 5'- gCGCGAuugGGUGC------GCCACGGUCCc -3' miRNA: 3'- -GCGCU---CCGCGauagauUGGUGCCGGG- -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 125901 | 0.66 | 0.90934 |
Target: 5'- gGCGAGGCgGCcGUCUcGGCCucgcugcUGGCgCCa -3' miRNA: 3'- gCGCUCCG-CGaUAGA-UUGGu------GCCG-GG- -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 156821 | 0.66 | 0.914623 |
Target: 5'- uGCGAGaCGCguccUUUGaccccccGCCGCGGCCg -3' miRNA: 3'- gCGCUCcGCGau--AGAU-------UGGUGCCGGg -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 131246 | 0.66 | 0.915199 |
Target: 5'- uCGCG-GGCGCUucgcCUAaggGCgGCGGUCg -3' miRNA: 3'- -GCGCuCCGCGAua--GAU---UGgUGCCGGg -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 135050 | 0.66 | 0.920826 |
Target: 5'- gCGCGcccGUGgUAUCUGACCGagaaGGCgCCa -3' miRNA: 3'- -GCGCuc-CGCgAUAGAUUGGUg---CCG-GG- -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 124780 | 0.66 | 0.920826 |
Target: 5'- aGCcAGGCGCUGU----CCGCGGUgCu -3' miRNA: 3'- gCGcUCCGCGAUAgauuGGUGCCGgG- -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 62954 | 0.66 | 0.920826 |
Target: 5'- uGCGGGGC-CUAgggCgUAGCaugGCGGCCg -3' miRNA: 3'- gCGCUCCGcGAUa--G-AUUGg--UGCCGGg -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 67019 | 0.66 | 0.917477 |
Target: 5'- gGCGAcGGCGUccgacaagaacgcagUAaCUAuagacGCCGCuGGCCCa -3' miRNA: 3'- gCGCU-CCGCG---------------AUaGAU-----UGGUG-CCGGG- -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 20440 | 0.66 | 0.915199 |
Target: 5'- cCGCGAGGcCGCgccgC-AACCcCuGCCCa -3' miRNA: 3'- -GCGCUCC-GCGaua-GaUUGGuGcCGGG- -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 125455 | 0.66 | 0.915199 |
Target: 5'- cCGCGAcggaGGCGgcaaGUCUcGCgGCGGCCg -3' miRNA: 3'- -GCGCU----CCGCga--UAGAuUGgUGCCGGg -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 29056 | 0.66 | 0.915199 |
Target: 5'- uCGCGGuGGCGUUcgCcg--CGCGGUCCa -3' miRNA: 3'- -GCGCU-CCGCGAuaGauugGUGCCGGG- -5' |
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24550 | 5' | -56.5 | NC_005264.1 | + | 64964 | 0.66 | 0.915199 |
Target: 5'- gGCGcuGCGCgcagAUCguuUCGCGGCCa -3' miRNA: 3'- gCGCucCGCGa---UAGauuGGUGCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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