miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24550 5' -56.5 NC_005264.1 + 3604 0.66 0.89949
Target:  5'- aGUGGGGCGCgccgccuuCCAUGGUCg -3'
miRNA:   3'- gCGCUCCGCGauagauu-GGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 5923 1.12 0.001806
Target:  5'- uCGCGAGGCGCUAUCUAACCACGGCCCg -3'
miRNA:   3'- -GCGCUCCGCGAUAGAUUGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 6891 0.67 0.883635
Target:  5'- cCGCGAGccGCGCaGUCccAGCgCGCGGCUUu -3'
miRNA:   3'- -GCGCUC--CGCGaUAGa-UUG-GUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 8412 0.69 0.787199
Target:  5'- cCGCGcuGGCGUacUCgGACCAgCGGCCg -3'
miRNA:   3'- -GCGCu-CCGCGauAGaUUGGU-GCCGGg -5'
24550 5' -56.5 NC_005264.1 + 9213 0.67 0.855238
Target:  5'- aGCcAGGCGCgaacgcgucgggaCUAACgGCGGCUCg -3'
miRNA:   3'- gCGcUCCGCGaua----------GAUUGgUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 10974 0.68 0.822176
Target:  5'- cCGCGAGaCGCcccccacgUGUCgccgccggAGCgGCGGCCCc -3'
miRNA:   3'- -GCGCUCcGCG--------AUAGa-------UUGgUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 12401 0.66 0.896292
Target:  5'- gGCauGAGGCGgcccaaccuuuacCUAUCUcGAUCAUGGCCa -3'
miRNA:   3'- gCG--CUCCGC-------------GAUAGA-UUGGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 12641 0.66 0.90934
Target:  5'- cCGCGAGGCcgccaaugugGCUAUUaAGgC-CGGCCg -3'
miRNA:   3'- -GCGCUCCG----------CGAUAGaUUgGuGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 13497 0.66 0.890396
Target:  5'- cCGCGGGGaugGCgguaaaucGUCcAACUcgaACGGCCCg -3'
miRNA:   3'- -GCGCUCCg--CGa-------UAGaUUGG---UGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 13775 0.69 0.768862
Target:  5'- gGUGuGGCGCUGg--GGCCGaaGCCCu -3'
miRNA:   3'- gCGCuCCGCGAUagaUUGGUgcCGGG- -5'
24550 5' -56.5 NC_005264.1 + 14392 0.68 0.83052
Target:  5'- uCGCG-GGCGCcggcuguUCUGACCACcaGGCa- -3'
miRNA:   3'- -GCGCuCCGCGau-----AGAUUGGUG--CCGgg -5'
24550 5' -56.5 NC_005264.1 + 16580 0.66 0.920826
Target:  5'- gGCGGcGGCGCaca-UGACUcCGGCCg -3'
miRNA:   3'- gCGCU-CCGCGauagAUUGGuGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 17369 0.72 0.590863
Target:  5'- gGCGGcGGCGCgGUCUGugUACGuGCgCCg -3'
miRNA:   3'- gCGCU-CCGCGaUAGAUugGUGC-CG-GG- -5'
24550 5' -56.5 NC_005264.1 + 18115 0.67 0.85215
Target:  5'- gCGCGAgaGGCuaagagacgugcuuGCUGUCUGGCgcgaGCGGCUa -3'
miRNA:   3'- -GCGCU--CCG--------------CGAUAGAUUGg---UGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 19165 0.68 0.838688
Target:  5'- aGCGgaugugugcccGGGCG--AUCguuuCCGCGGCCCa -3'
miRNA:   3'- gCGC-----------UCCGCgaUAGauu-GGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 19421 0.75 0.429057
Target:  5'- gGCGAGGCGCcggGUgUGGCCGCGGg-- -3'
miRNA:   3'- gCGCUCCGCGa--UAgAUUGGUGCCggg -5'
24550 5' -56.5 NC_005264.1 + 20022 0.66 0.890396
Target:  5'- gCGCGAuuGUGgaGUCcuACCAUGGCCUg -3'
miRNA:   3'- -GCGCUc-CGCgaUAGauUGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 20321 0.67 0.883635
Target:  5'- uGC---GCGCgg--UAGCCGCGGCCCa -3'
miRNA:   3'- gCGcucCGCGauagAUUGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 20440 0.66 0.915199
Target:  5'- cCGCGAGGcCGCgccgC-AACCcCuGCCCa -3'
miRNA:   3'- -GCGCUCC-GCGaua-GaUUGGuGcCGGG- -5'
24550 5' -56.5 NC_005264.1 + 20724 0.66 0.915199
Target:  5'- gCGCGAGGUGCcucCUAAUCuuGcGCUCu -3'
miRNA:   3'- -GCGCUCCGCGauaGAUUGGugC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.