miRNA display CGI


Results 1 - 20 of 199 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24550 5' -56.5 NC_005264.1 + 5923 1.12 0.001806
Target:  5'- uCGCGAGGCGCUAUCUAACCACGGCCCg -3'
miRNA:   3'- -GCGCUCCGCGAUAGAUUGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 48383 0.72 0.610985
Target:  5'- gCGuCGAGGCGCUcgacguucGUCgagGCgACGGCCg -3'
miRNA:   3'- -GC-GCUCCGCGA--------UAGau-UGgUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 55199 0.72 0.621073
Target:  5'- cCGCGAaacgucGGCGCagacucauUCUc-CCGCGGCCCa -3'
miRNA:   3'- -GCGCU------CCGCGau------AGAuuGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 80630 0.66 0.920826
Target:  5'- aCGCGAugcuGGCGCcgcuaccGUCUAauACgAUGGCCg -3'
miRNA:   3'- -GCGCU----CCGCGa------UAGAU--UGgUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 53256 0.76 0.394796
Target:  5'- cCGCG-GGCGCgUGUCUGGcuugcugucCCGCGGCgCCg -3'
miRNA:   3'- -GCGCuCCGCG-AUAGAUU---------GGUGCCG-GG- -5'
24550 5' -56.5 NC_005264.1 + 85911 0.76 0.411706
Target:  5'- aCGC-AGGCGCUGacUCUGACCGCgucugaGGCCa -3'
miRNA:   3'- -GCGcUCCGCGAU--AGAUUGGUG------CCGGg -5'
24550 5' -56.5 NC_005264.1 + 19421 0.75 0.429057
Target:  5'- gGCGAGGCGCcggGUgUGGCCGCGGg-- -3'
miRNA:   3'- gCGCUCCGCGa--UAgAUUGGUGCCggg -5'
24550 5' -56.5 NC_005264.1 + 59998 0.74 0.512037
Target:  5'- aGCGAgacGGcCGCg---UGGCCGCGGCCCa -3'
miRNA:   3'- gCGCU---CC-GCGauagAUUGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 146418 0.73 0.5314
Target:  5'- gGCG-GGUGCUGauggcUCgauGCCGCGGCUCu -3'
miRNA:   3'- gCGCuCCGCGAU-----AGau-UGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 17369 0.72 0.590863
Target:  5'- gGCGGcGGCGCgGUCUGugUACGuGCgCCg -3'
miRNA:   3'- gCGCU-CCGCGaUAGAUugGUGC-CG-GG- -5'
24550 5' -56.5 NC_005264.1 + 65563 0.73 0.560916
Target:  5'- gCGCGAGGCaGCggccaCUAccguGCCAaGGCCCg -3'
miRNA:   3'- -GCGCUCCG-CGaua--GAU----UGGUgCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 106248 0.73 0.521684
Target:  5'- uCGCGAGGCGCUcgCgccuGCUgACGGCg- -3'
miRNA:   3'- -GCGCUCCGCGAuaGau--UGG-UGCCGgg -5'
24550 5' -56.5 NC_005264.1 + 65163 0.81 0.212854
Target:  5'- cCGCGGcGGCGCccucUCUGGCCAUGGCCg -3'
miRNA:   3'- -GCGCU-CCGCGau--AGAUUGGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 133709 0.73 0.570858
Target:  5'- cCGCGcacuGGUGCUGccUCUGGCCgACaGCCCu -3'
miRNA:   3'- -GCGCu---CCGCGAU--AGAUUGG-UGcCGGG- -5'
24550 5' -56.5 NC_005264.1 + 82143 0.77 0.334779
Target:  5'- aCGCGAGGauCGCggaaacuuuuuugucUGUcCUGGCCAUGGCCCu -3'
miRNA:   3'- -GCGCUCC--GCG---------------AUA-GAUUGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 103964 0.73 0.521684
Target:  5'- aCGCGuGGCGCUGcgC-AACCcuACGGCCg -3'
miRNA:   3'- -GCGCuCCGCGAUa-GaUUGG--UGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 156692 0.73 0.570858
Target:  5'- aCGCGAuGCGCgacg-GGCgCGCGGCCCu -3'
miRNA:   3'- -GCGCUcCGCGauagaUUG-GUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 137250 0.72 0.621073
Target:  5'- gGCccGGCGCUAUUcauuUGGCCAUGGgCCa -3'
miRNA:   3'- gCGcuCCGCGAUAG----AUUGGUGCCgGG- -5'
24550 5' -56.5 NC_005264.1 + 124244 0.76 0.378342
Target:  5'- gGCGAGGCGaagcUCUucuuCCGCGGCCUc -3'
miRNA:   3'- gCGCUCCGCgau-AGAuu--GGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 70640 0.75 0.420327
Target:  5'- gCGCGcAGGCGC-GUCaacaacaccgUGGCCGCGGCgCCg -3'
miRNA:   3'- -GCGC-UCCGCGaUAG----------AUUGGUGCCG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.