miRNA display CGI


Results 1 - 20 of 199 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24550 5' -56.5 NC_005264.1 + 5923 1.12 0.001806
Target:  5'- uCGCGAGGCGCUAUCUAACCACGGCCCg -3'
miRNA:   3'- -GCGCUCCGCGAUAGAUUGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 65163 0.81 0.212854
Target:  5'- cCGCGGcGGCGCccucUCUGGCCAUGGCCg -3'
miRNA:   3'- -GCGCU-CCGCGau--AGAUUGGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 113251 0.78 0.303204
Target:  5'- aCGCGAGGCauguccgucucGCguaagAUC--GCCGCGGCCCa -3'
miRNA:   3'- -GCGCUCCG-----------CGa----UAGauUGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 82143 0.77 0.334779
Target:  5'- aCGCGAGGauCGCggaaacuuuuuugucUGUcCUGGCCAUGGCCCu -3'
miRNA:   3'- -GCGCUCC--GCG---------------AUA-GAUUGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 124244 0.76 0.378342
Target:  5'- gGCGAGGCGaagcUCUucuuCCGCGGCCUc -3'
miRNA:   3'- gCGCUCCGCgau-AGAuu--GGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 157809 0.76 0.378342
Target:  5'- gGCGAGGCGaagcUCUucuuCCGCGGCCUc -3'
miRNA:   3'- gCGCUCCGCgau-AGAuu--GGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 53256 0.76 0.394796
Target:  5'- cCGCG-GGCGCgUGUCUGGcuugcugucCCGCGGCgCCg -3'
miRNA:   3'- -GCGCuCCGCG-AUAGAUU---------GGUGCCG-GG- -5'
24550 5' -56.5 NC_005264.1 + 85911 0.76 0.411706
Target:  5'- aCGC-AGGCGCUGacUCUGACCGCgucugaGGCCa -3'
miRNA:   3'- -GCGcUCCGCGAU--AGAUUGGUG------CCGGg -5'
24550 5' -56.5 NC_005264.1 + 70640 0.75 0.420327
Target:  5'- gCGCGcAGGCGC-GUCaacaacaccgUGGCCGCGGCgCCg -3'
miRNA:   3'- -GCGC-UCCGCGaUAG----------AUUGGUGCCG-GG- -5'
24550 5' -56.5 NC_005264.1 + 19421 0.75 0.429057
Target:  5'- gGCGAGGCGCcggGUgUGGCCGCGGg-- -3'
miRNA:   3'- gCGCUCCGCGa--UAgAUUGGUGCCggg -5'
24550 5' -56.5 NC_005264.1 + 94894 0.75 0.437892
Target:  5'- aCGCauGGGCGCcg-UUGACCACGGCCg -3'
miRNA:   3'- -GCGc-UCCGCGauaGAUUGGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 136649 0.75 0.446831
Target:  5'- uGCGcGGCGCcgucUCUGAgCGCGGCCUc -3'
miRNA:   3'- gCGCuCCGCGau--AGAUUgGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 53394 0.74 0.483563
Target:  5'- gCGgGGGGCGCgacgGUUgcAACuCGCGGCCCc -3'
miRNA:   3'- -GCgCUCCGCGa---UAGa-UUG-GUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 59998 0.74 0.512037
Target:  5'- aGCGAgacGGcCGCg---UGGCCGCGGCCCa -3'
miRNA:   3'- gCGCU---CC-GCGauagAUUGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 103964 0.73 0.521684
Target:  5'- aCGCGuGGCGCUGcgC-AACCcuACGGCCg -3'
miRNA:   3'- -GCGCuCCGCGAUa-GaUUGG--UGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 106248 0.73 0.521684
Target:  5'- uCGCGAGGCGCUcgCgccuGCUgACGGCg- -3'
miRNA:   3'- -GCGCUCCGCGAuaGau--UGG-UGCCGgg -5'
24550 5' -56.5 NC_005264.1 + 108754 0.73 0.521684
Target:  5'- aGCGGGGCGag----GACCAUGGCCa -3'
miRNA:   3'- gCGCUCCGCgauagaUUGGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 58186 0.73 0.5314
Target:  5'- cCGcCGGGGcCGCUG---AGCCACGGCCg -3'
miRNA:   3'- -GC-GCUCC-GCGAUagaUUGGUGCCGGg -5'
24550 5' -56.5 NC_005264.1 + 146418 0.73 0.5314
Target:  5'- gGCG-GGUGCUGauggcUCgauGCCGCGGCUCu -3'
miRNA:   3'- gCGCuCCGCGAU-----AGau-UGGUGCCGGG- -5'
24550 5' -56.5 NC_005264.1 + 76241 0.73 0.541181
Target:  5'- uCGCGAGGCGCgac--GACCGCGuGUCUc -3'
miRNA:   3'- -GCGCUCCGCGauagaUUGGUGC-CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.