Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24575 | 5' | -53.8 | NC_005264.1 | + | 57136 | 0.69 | 0.905289 |
Target: 5'- gGGCGCggaCGUagGCuGGUCUGUCuUUGCg -3' miRNA: 3'- gCUGCGaa-GCG--CGuCCAGAUAG-AGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 50814 | 0.69 | 0.905289 |
Target: 5'- uCGGCGCg-CGCGCAGGUUUG---CGUg -3' miRNA: 3'- -GCUGCGaaGCGCGUCCAGAUagaGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 58768 | 0.69 | 0.885573 |
Target: 5'- aGGCGCacgCGCGguGGUCgg---CGCa -3' miRNA: 3'- gCUGCGaa-GCGCguCCAGauagaGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 58117 | 0.69 | 0.885573 |
Target: 5'- gCGGCGCUgcugcgcgaccUCGCGCAGccGUCUGgugCUcCGUc -3' miRNA: 3'- -GCUGCGA-----------AGCGCGUC--CAGAUa--GA-GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 5792 | 0.69 | 0.898948 |
Target: 5'- uGGCGCcacgucugUUCGCGCcuGuacUCUAUUUCGCg -3' miRNA: 3'- gCUGCG--------AAGCGCGucC---AGAUAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 35659 | 0.69 | 0.885573 |
Target: 5'- -uGCGCUUCGCGCAcgauGGUCg---UUGCg -3' miRNA: 3'- gcUGCGAAGCGCGU----CCAGauagAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 129389 | 0.68 | 0.937374 |
Target: 5'- cCGugGCgggaauuaauagUCaGCGCggGGGUUUAUuCUCGCg -3' miRNA: 3'- -GCugCGa-----------AG-CGCG--UCCAGAUA-GAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 65370 | 0.68 | 0.917262 |
Target: 5'- uGACGC--CGC-CGGGUagaGUCUCGCa -3' miRNA: 3'- gCUGCGaaGCGcGUCCAga-UAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 76102 | 0.68 | 0.92289 |
Target: 5'- gGGCGCgaacaGCGCggcaucagaggGGGUCUgcagAUCUUGCg -3' miRNA: 3'- gCUGCGaag--CGCG-----------UCCAGA----UAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 75820 | 0.68 | 0.911394 |
Target: 5'- aGGCGC---GCGguGGUCUAUgUUGUg -3' miRNA: 3'- gCUGCGaagCGCguCCAGAUAgAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 20262 | 0.68 | 0.928279 |
Target: 5'- gCGGCGCggccUCGCGgAGGggaCcGUCUgCGCg -3' miRNA: 3'- -GCUGCGa---AGCGCgUCCa--GaUAGA-GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 51085 | 0.68 | 0.92289 |
Target: 5'- aGACcuGCUUCGCggucgccgguGCugcGGUCUG-CUCGCg -3' miRNA: 3'- gCUG--CGAAGCG----------CGu--CCAGAUaGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 82217 | 0.68 | 0.92289 |
Target: 5'- gCGGCGCcagcaUCGCGUAGaGU--GUCUCGUu -3' miRNA: 3'- -GCUGCGa----AGCGCGUC-CAgaUAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 100526 | 0.68 | 0.937374 |
Target: 5'- aGACGaca-GgGCGGGUCUAguccggacgacgCUCGCg -3' miRNA: 3'- gCUGCgaagCgCGUCCAGAUa-----------GAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 94718 | 0.68 | 0.928279 |
Target: 5'- aCGGCGCccaUGCGUuuuGUCUuuuGUCUCGCa -3' miRNA: 3'- -GCUGCGaa-GCGCGuc-CAGA---UAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 100723 | 0.68 | 0.938336 |
Target: 5'- aCGugGCUcuggagaggGCGCuGGUCgagCUCGCc -3' miRNA: 3'- -GCugCGAag-------CGCGuCCAGauaGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 91064 | 0.68 | 0.938336 |
Target: 5'- aGGCGCUUCuGCaacggcgccaGCAGGUCggcuaGUCguaaCGCg -3' miRNA: 3'- gCUGCGAAG-CG----------CGUCCAGa----UAGa---GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 26991 | 0.68 | 0.938336 |
Target: 5'- uGACGUggCaCGCGGGUagccauUCUCGCu -3' miRNA: 3'- gCUGCGaaGcGCGUCCAgau---AGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 57777 | 0.67 | 0.95561 |
Target: 5'- ---gGCUUCGCGUc-GUCUAgcucCUCGCg -3' miRNA: 3'- gcugCGAAGCGCGucCAGAUa---GAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 7888 | 0.67 | 0.943007 |
Target: 5'- aGAUGCggCGuCGgAGGUCUc-CUCGCc -3' miRNA: 3'- gCUGCGaaGC-GCgUCCAGAuaGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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