Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24575 | 5' | -53.8 | NC_005264.1 | + | 32309 | 1.11 | 0.003971 |
Target: 5'- gCGACGCUUCGCGCAGGUCUAUCUCGCc -3' miRNA: 3'- -GCUGCGAAGCGCGUCCAGAUAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 130554 | 0.78 | 0.45189 |
Target: 5'- gCGGCGCgugugcuaCGCGCAGGUCUcgcUCUCGg -3' miRNA: 3'- -GCUGCGaa------GCGCGUCCAGAu--AGAGCg -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 98061 | 0.75 | 0.619336 |
Target: 5'- gGGCGCUgCGCGCAGaUC-GUUUCGCg -3' miRNA: 3'- gCUGCGAaGCGCGUCcAGaUAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 38046 | 0.72 | 0.750356 |
Target: 5'- aCGACGg-UCGCGUGGGUCUcccagcuuuuuUCUUGCg -3' miRNA: 3'- -GCUGCgaAGCGCGUCCAGAu----------AGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 22006 | 0.72 | 0.740648 |
Target: 5'- aGGCGCggCGCGUAGGUUUuuugCcCGCg -3' miRNA: 3'- gCUGCGaaGCGCGUCCAGAua--GaGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 157073 | 0.72 | 0.750356 |
Target: 5'- aCGACGg-UCGCGUGGGUCUcccagcuuuuuUCUUGCg -3' miRNA: 3'- -GCUGCgaAGCGCGUCCAGAu----------AGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 56596 | 0.72 | 0.769452 |
Target: 5'- uGGCGCUaCGCGCGGcccaUCUgggAUCUUGCa -3' miRNA: 3'- gCUGCGAaGCGCGUCc---AGA---UAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 73721 | 0.71 | 0.814883 |
Target: 5'- cCGACgGCcUUGCGCGGGU---UCUCGUa -3' miRNA: 3'- -GCUG-CGaAGCGCGUCCAgauAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 59022 | 0.71 | 0.823503 |
Target: 5'- gGAgGCaggCGCGuCAGGUCgGUCUcCGCg -3' miRNA: 3'- gCUgCGaa-GCGC-GUCCAGaUAGA-GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 97942 | 0.71 | 0.814883 |
Target: 5'- aGA-GCUUCGCGUcgAGGUC-AUCUcCGCc -3' miRNA: 3'- gCUgCGAAGCGCG--UCCAGaUAGA-GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 5534 | 0.71 | 0.831949 |
Target: 5'- gCGGCGUcUCGCGCggagcGGGUUUcUCUuCGCa -3' miRNA: 3'- -GCUGCGaAGCGCG-----UCCAGAuAGA-GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 14542 | 0.71 | 0.831949 |
Target: 5'- cCGGCGCgcaCGCGCGcGGUCUccagaAUCUCccGCc -3' miRNA: 3'- -GCUGCGaa-GCGCGU-CCAGA-----UAGAG--CG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 62273 | 0.71 | 0.788055 |
Target: 5'- aCGGCGCUUUGCGCccuuGUCccgcgAUCUCGg -3' miRNA: 3'- -GCUGCGAAGCGCGuc--CAGa----UAGAGCg -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 42672 | 0.7 | 0.871298 |
Target: 5'- --uCGCUUCGUGUuccAGGUCUG-CUCGg -3' miRNA: 3'- gcuGCGAAGCGCG---UCCAGAUaGAGCg -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 149662 | 0.7 | 0.871298 |
Target: 5'- cCGcGCGCagCGCGUAGGUCgucGUCgUCGUc -3' miRNA: 3'- -GC-UGCGaaGCGCGUCCAGa--UAG-AGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 139944 | 0.7 | 0.848285 |
Target: 5'- cCGACGCggugcugcuaUCGUGCccgaaccagGGGUCUAUUUCGa -3' miRNA: 3'- -GCUGCGa---------AGCGCG---------UCCAGAUAGAGCg -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 30635 | 0.7 | 0.871298 |
Target: 5'- cCGcGCGCagCGCGUAGGUCgucGUCgUCGUc -3' miRNA: 3'- -GC-UGCGaaGCGCGUCCAGa--UAG-AGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 96986 | 0.7 | 0.846686 |
Target: 5'- -uGCGCgUUCGCGUGGGaagggcguaucgUUAUCUCGCg -3' miRNA: 3'- gcUGCG-AAGCGCGUCCa-----------GAUAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 103897 | 0.69 | 0.898948 |
Target: 5'- aGACGCcgucaacUUGCGCAGG-CUc-CUCGCg -3' miRNA: 3'- gCUGCGa------AGCGCGUCCaGAuaGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 50814 | 0.69 | 0.905289 |
Target: 5'- uCGGCGCg-CGCGCAGGUUUG---CGUg -3' miRNA: 3'- -GCUGCGaaGCGCGUCCAGAUagaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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