miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24601 5' -59.4 NC_005264.1 + 39180 0.66 0.765912
Target:  5'- cUGGgcGCGcgacucuaccgcgcaUCGCuucagagucuGCGGCUGCCGGAUa -3'
miRNA:   3'- aAUCuuCGC---------------AGCG----------CGCCGGUGGCCUA- -5'
24601 5' -59.4 NC_005264.1 + 138423 0.66 0.765912
Target:  5'- -gAGAAcgugcuuuGCGUCGCGCuGcucgcgaucuaccucGCCGCCGGGg -3'
miRNA:   3'- aaUCUU--------CGCAGCGCG-C---------------CGGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 5340 0.66 0.76216
Target:  5'- --cGAAGCgGUCGCucgucccggGCGGCCuCgCGGAUg -3'
miRNA:   3'- aauCUUCG-CAGCG---------CGCCGGuG-GCCUA- -5'
24601 5' -59.4 NC_005264.1 + 124367 0.66 0.76216
Target:  5'- --cGAAGCgGUCGCucgucccggGCGGCCuCgCGGAUg -3'
miRNA:   3'- aauCUUCG-CAGCG---------CGCCGGuG-GCCUA- -5'
24601 5' -59.4 NC_005264.1 + 108508 0.66 0.752704
Target:  5'- gUGGGguacGGCGUCGUGCGccaCCACCGuGGc -3'
miRNA:   3'- aAUCU----UCGCAGCGCGCc--GGUGGC-CUa -5'
24601 5' -59.4 NC_005264.1 + 161995 0.66 0.752704
Target:  5'- -gGGAGGCGgaUCGUGgGGCaCGCCaGAg -3'
miRNA:   3'- aaUCUUCGC--AGCGCgCCG-GUGGcCUa -5'
24601 5' -59.4 NC_005264.1 + 76654 0.66 0.743143
Target:  5'- --cGAGGC--CGaUGCGGCCACCGGu- -3'
miRNA:   3'- aauCUUCGcaGC-GCGCCGGUGGCCua -5'
24601 5' -59.4 NC_005264.1 + 8703 0.66 0.743143
Target:  5'- -aAGAAcucgcucugcGCG-CGCGUGGCCGCCGu-- -3'
miRNA:   3'- aaUCUU----------CGCaGCGCGCCGGUGGCcua -5'
24601 5' -59.4 NC_005264.1 + 19524 0.66 0.743143
Target:  5'- -gAGAAGC-UCGgGaCGGCCGCCGc-- -3'
miRNA:   3'- aaUCUUCGcAGCgC-GCCGGUGGCcua -5'
24601 5' -59.4 NC_005264.1 + 106526 0.66 0.733487
Target:  5'- --cGAcGGCGgcaGCGCGGCCG-CGGAg -3'
miRNA:   3'- aauCU-UCGCag-CGCGCCGGUgGCCUa -5'
24601 5' -59.4 NC_005264.1 + 152850 0.66 0.733487
Target:  5'- gUAGAGGCGUCaCGCGGUCuaacccacucuGCCGa-- -3'
miRNA:   3'- aAUCUUCGCAGcGCGCCGG-----------UGGCcua -5'
24601 5' -59.4 NC_005264.1 + 64361 0.66 0.723745
Target:  5'- -gAGGAGaugcccUCGCGCGuGCCgGCCGGGUu -3'
miRNA:   3'- aaUCUUCgc----AGCGCGC-CGG-UGGCCUA- -5'
24601 5' -59.4 NC_005264.1 + 5060 0.66 0.723745
Target:  5'- cUGGcAGGgGUCGCaagGCGGCCAgcccguCCGGGg -3'
miRNA:   3'- aAUC-UUCgCAGCG---CGCCGGU------GGCCUa -5'
24601 5' -59.4 NC_005264.1 + 124087 0.66 0.723745
Target:  5'- cUGGcAGGgGUCGCaagGCGGCCAgcccguCCGGGg -3'
miRNA:   3'- aAUC-UUCgCAGCG---CGCCGGU------GGCCUa -5'
24601 5' -59.4 NC_005264.1 + 18582 0.67 0.713926
Target:  5'- -gAGAacucGGUGUCgGUGCGGUagcaGCCGGAg -3'
miRNA:   3'- aaUCU----UCGCAG-CGCGCCGg---UGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 28025 0.67 0.709979
Target:  5'- -cGGggGCGggaggucuuccggCGCGCGcGaCGCCGGGUa -3'
miRNA:   3'- aaUCuuCGCa------------GCGCGC-CgGUGGCCUA- -5'
24601 5' -59.4 NC_005264.1 + 17137 0.67 0.694092
Target:  5'- -cGGuacGGCGUCgagggGCGCGGCUACaGGAUa -3'
miRNA:   3'- aaUCu--UCGCAG-----CGCGCCGGUGgCCUA- -5'
24601 5' -59.4 NC_005264.1 + 97721 0.67 0.684095
Target:  5'- -aGGGcuuGGCGUCGCGU--UCACCGGAg -3'
miRNA:   3'- aaUCU---UCGCAGCGCGccGGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 30518 0.67 0.684095
Target:  5'- -gGGAAGCGgcucUCGCGCaguuuGGCCgACCGcGGUg -3'
miRNA:   3'- aaUCUUCGC----AGCGCG-----CCGG-UGGC-CUA- -5'
24601 5' -59.4 NC_005264.1 + 6208 0.67 0.674056
Target:  5'- -gAGAcGCGUccuuugacccccCGcCGCGGCCGCCGcGAg -3'
miRNA:   3'- aaUCUuCGCA------------GC-GCGCCGGUGGC-CUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.