miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24629 3' -61.1 NC_005264.1 + 29954 0.68 0.515597
Target:  5'- cUUCGCucacagcaugccaauGuCCGCGUCccugGCCGCUGGCAAc -3'
miRNA:   3'- cAAGCG---------------C-GGCGCGGa---CGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 116390 0.67 0.580081
Target:  5'- ---aGCGCCGCGCaaaaGCCGCaGGCc- -3'
miRNA:   3'- caagCGCGGCGCGga--CGGCGaCUGuu -5'
24629 3' -61.1 NC_005264.1 + 104820 0.67 0.577103
Target:  5'- ---gGCGCCGCacgacggccuguccGCCgggGCCGCUGAg-- -3'
miRNA:   3'- caagCGCGGCG--------------CGGa--CGGCGACUguu -5'
24629 3' -61.1 NC_005264.1 + 44640 0.67 0.570169
Target:  5'- -cUUGCGCCGCGCCUuagacuggugcGCCaaGUUcGACGAg -3'
miRNA:   3'- caAGCGCGGCGCGGA-----------CGG--CGA-CUGUU- -5'
24629 3' -61.1 NC_005264.1 + 86142 0.68 0.550477
Target:  5'- -gUUGCGCCGCGCUccgcGCCaaGCUGgGCAGa -3'
miRNA:   3'- caAGCGCGGCGCGGa---CGG--CGAC-UGUU- -5'
24629 3' -61.1 NC_005264.1 + 64372 0.68 0.550477
Target:  5'- -cUCGCG-CGUGCCgGCCggGUUGACAAa -3'
miRNA:   3'- caAGCGCgGCGCGGaCGG--CGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 7116 0.68 0.540708
Target:  5'- --aCGCGCCguuaGCGCCgGCCGaCUGAg-- -3'
miRNA:   3'- caaGCGCGG----CGCGGaCGGC-GACUguu -5'
24629 3' -61.1 NC_005264.1 + 68443 0.68 0.530998
Target:  5'- --cCGCGCCGCgGUCUGCgCGCggagGGCc- -3'
miRNA:   3'- caaGCGCGGCG-CGGACG-GCGa---CUGuu -5'
24629 3' -61.1 NC_005264.1 + 139097 0.68 0.521352
Target:  5'- --aCGaCGUCGCGgCUGCUGCUGAg-- -3'
miRNA:   3'- caaGC-GCGGCGCgGACGGCGACUguu -5'
24629 3' -61.1 NC_005264.1 + 105764 0.67 0.580081
Target:  5'- --aCGaagaUGCGCCcGCCGCUGACGAg -3'
miRNA:   3'- caaGCgcg-GCGCGGaCGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 142882 0.67 0.589033
Target:  5'- -cUCGCGCCGCGCCUuucuccaGUCacgGC-GACGAu -3'
miRNA:   3'- caAGCGCGGCGCGGA-------CGG---CGaCUGUU- -5'
24629 3' -61.1 NC_005264.1 + 102000 0.67 0.590029
Target:  5'- --aCGCGCCGaCGCCgacGCCaaGCUGAa-- -3'
miRNA:   3'- caaGCGCGGC-GCGGa--CGG--CGACUguu -5'
24629 3' -61.1 NC_005264.1 + 78528 0.66 0.6601
Target:  5'- -aUCGCGCCGUGCCcGgUGCacGACu- -3'
miRNA:   3'- caAGCGCGGCGCGGaCgGCGa-CUGuu -5'
24629 3' -61.1 NC_005264.1 + 58897 0.66 0.6601
Target:  5'- cGUUCGCGCauaGCGgaUGCCGCcuccucgaUGGCGu -3'
miRNA:   3'- -CAAGCGCGg--CGCggACGGCG--------ACUGUu -5'
24629 3' -61.1 NC_005264.1 + 149224 0.66 0.650094
Target:  5'- --gUGCGCCaGCGgucaCUGUCGCUGGCc- -3'
miRNA:   3'- caaGCGCGG-CGCg---GACGGCGACUGuu -5'
24629 3' -61.1 NC_005264.1 + 17680 0.66 0.650094
Target:  5'- -gUCaCGCCGgcuCGUCaGCCGCUGGCGGa -3'
miRNA:   3'- caAGcGCGGC---GCGGaCGGCGACUGUU- -5'
24629 3' -61.1 NC_005264.1 + 11969 0.66 0.650094
Target:  5'- -gUCGCGCCaUGuCUUGCCGCgcgcGGCAc -3'
miRNA:   3'- caAGCGCGGcGC-GGACGGCGa---CUGUu -5'
24629 3' -61.1 NC_005264.1 + 116125 0.66 0.640073
Target:  5'- ---aGCGCUGCGCCUcuGCCGCa----- -3'
miRNA:   3'- caagCGCGGCGCGGA--CGGCGacuguu -5'
24629 3' -61.1 NC_005264.1 + 11427 0.67 0.600006
Target:  5'- -gUCGCGgCGgaCGCCgGCCGCcGGCAu -3'
miRNA:   3'- caAGCGCgGC--GCGGaCGGCGaCUGUu -5'
24629 3' -61.1 NC_005264.1 + 103377 0.67 0.599007
Target:  5'- -gUCGUcaugccuGCCGCGCgggGCCGCUuuGACAAa -3'
miRNA:   3'- caAGCG-------CGGCGCGga-CGGCGA--CUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.