miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24644 3' -58.2 NC_005264.1 + 31838 0.69 0.662776
Target:  5'- cCGUGCcGCgCGCGgcaAGACAUGGGcGCg- -3'
miRNA:   3'- -GCGCGuCG-GUGCa--UCUGUACCC-CGau -5'
24644 3' -58.2 NC_005264.1 + 120106 0.68 0.712956
Target:  5'- cCG-GguGCCGCGcAGAaGUGGGGCg- -3'
miRNA:   3'- -GCgCguCGGUGCaUCUgUACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 109597 0.68 0.707002
Target:  5'- aCGCGCccgcggggcacggaaAGCaaaugGCGUGGGCggGGGGCg- -3'
miRNA:   3'- -GCGCG---------------UCGg----UGCAUCUGuaCCCCGau -5'
24644 3' -58.2 NC_005264.1 + 139852 0.68 0.70302
Target:  5'- aCGCGCGucCCAUGUGG-CAcGGGGCg- -3'
miRNA:   3'- -GCGCGUc-GGUGCAUCuGUaCCCCGau -5'
24644 3' -58.2 NC_005264.1 + 43588 0.68 0.70302
Target:  5'- gGCGcCAGgCACGgaaagcGAUcgGGGGCUAc -3'
miRNA:   3'- gCGC-GUCgGUGCau----CUGuaCCCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 87637 0.68 0.682981
Target:  5'- cCGaUGCAGCCGCGUggggcgcgGGACcUGGcGGCa- -3'
miRNA:   3'- -GC-GCGUCGGUGCA--------UCUGuACC-CCGau -5'
24644 3' -58.2 NC_005264.1 + 140408 0.68 0.682981
Target:  5'- aGCGUuuaCACGUAGGCAacGGGGCg- -3'
miRNA:   3'- gCGCGucgGUGCAUCUGUa-CCCCGau -5'
24644 3' -58.2 NC_005264.1 + 154200 0.68 0.672895
Target:  5'- uCGCGC-GaaACGUAGACGUGGcGGUg- -3'
miRNA:   3'- -GCGCGuCggUGCAUCUGUACC-CCGau -5'
24644 3' -58.2 NC_005264.1 + 5287 0.68 0.672895
Target:  5'- gGCGgGGCgGCGgcuGACccGUGGGGCg- -3'
miRNA:   3'- gCGCgUCGgUGCau-CUG--UACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 132484 0.68 0.722824
Target:  5'- aCG-GCAGCCACGUGGccGCA-GGGcaGCUGc -3'
miRNA:   3'- -GCgCGUCGGUGCAUC--UGUaCCC--CGAU- -5'
24644 3' -58.2 NC_005264.1 + 153223 0.68 0.722824
Target:  5'- uCGCGUacAGCCACGUuacggagccuucGGcGCAUGGGGg-- -3'
miRNA:   3'- -GCGCG--UCGGUGCA------------UC-UGUACCCCgau -5'
24644 3' -58.2 NC_005264.1 + 97166 0.68 0.722824
Target:  5'- aCGCGagAGCCACGUGuGAacuaGGGGCa- -3'
miRNA:   3'- -GCGCg-UCGGUGCAU-CUgua-CCCCGau -5'
24644 3' -58.2 NC_005264.1 + 8065 0.66 0.815783
Target:  5'- aCGuCGCGGCCGCaGUcGGGCAcgGGcGGCg- -3'
miRNA:   3'- -GC-GCGUCGGUG-CA-UCUGUa-CC-CCGau -5'
24644 3' -58.2 NC_005264.1 + 75410 0.66 0.815783
Target:  5'- uGCGCGGCCGCG--GGCAguguacgGcGGGCc- -3'
miRNA:   3'- gCGCGUCGGUGCauCUGUa------C-CCCGau -5'
24644 3' -58.2 NC_005264.1 + 52591 0.66 0.798236
Target:  5'- aCGCGC-GCUACGUGGAUu---GGCUGa -3'
miRNA:   3'- -GCGCGuCGGUGCAUCUGuaccCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 93345 0.66 0.788329
Target:  5'- gGCGUGGCaCGCGUGuauggauaugugcGGCGaaUGGGGCg- -3'
miRNA:   3'- gCGCGUCG-GUGCAU-------------CUGU--ACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 44875 0.67 0.777329
Target:  5'- -cUGCAGCCugGggAGGCGggcccgucgucgucUGGGGCg- -3'
miRNA:   3'- gcGCGUCGGugCa-UCUGU--------------ACCCCGau -5'
24644 3' -58.2 NC_005264.1 + 7934 0.67 0.770827
Target:  5'- -aCGCuGCCGCG-AGACGagccggaGGGGCUAc -3'
miRNA:   3'- gcGCGuCGGUGCaUCUGUa------CCCCGAU- -5'
24644 3' -58.2 NC_005264.1 + 51660 0.67 0.761434
Target:  5'- aGCGCuGCCacucGCGUAGACccGGuGGUa- -3'
miRNA:   3'- gCGCGuCGG----UGCAUCUGuaCC-CCGau -5'
24644 3' -58.2 NC_005264.1 + 100072 0.68 0.722824
Target:  5'- uGCGgGGCCuaggGCGUAG-CAUGGcGGCc- -3'
miRNA:   3'- gCGCgUCGG----UGCAUCuGUACC-CCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.