miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24644 5' -59.3 NC_005264.1 + 126292 0.66 0.764816
Target:  5'- gGCCAuGCCGCuuucggGCgCGCGGccgauGGCUCc- -3'
miRNA:   3'- -CGGU-CGGCGua----CGgGCGCU-----UCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 123749 0.66 0.764816
Target:  5'- gGUCAgacGCCGC-UGCCCGCcGAGC-CGg -3'
miRNA:   3'- -CGGU---CGGCGuACGGGCGcUUCGaGUu -5'
24644 5' -59.3 NC_005264.1 + 156111 0.66 0.755363
Target:  5'- cGCCAcGCCGCGgaguaCCGCGAcGCUa-- -3'
miRNA:   3'- -CGGU-CGGCGUacg--GGCGCUuCGAguu -5'
24644 5' -59.3 NC_005264.1 + 21202 0.66 0.755363
Target:  5'- cGUCGGCCGCAgugGUacuuucggCCGCGAcGGCUUu- -3'
miRNA:   3'- -CGGUCGGCGUa--CG--------GGCGCU-UCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 30429 0.66 0.755363
Target:  5'- -aCAGCCGCggcuuguagcucGUGCCUGCGGccacGUUCAc -3'
miRNA:   3'- cgGUCGGCG------------UACGGGCGCUu---CGAGUu -5'
24644 5' -59.3 NC_005264.1 + 159895 0.66 0.745803
Target:  5'- gGCgAGCCGCGUuucucaaaGCaCGCuGGAGCUCGc -3'
miRNA:   3'- -CGgUCGGCGUA--------CGgGCG-CUUCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 70242 0.66 0.744842
Target:  5'- gGCCAG-CGCAucaaaccUGCCCGCGucGGCg--- -3'
miRNA:   3'- -CGGUCgGCGU-------ACGGGCGCu-UCGaguu -5'
24644 5' -59.3 NC_005264.1 + 143166 0.66 0.736145
Target:  5'- aCgAGCCGCGcuuucagaUGCCaCGCGGaagcuaugcgAGCUCAGc -3'
miRNA:   3'- cGgUCGGCGU--------ACGG-GCGCU----------UCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 132392 0.66 0.726399
Target:  5'- gGCCgAGCCGgG-GCCCGCG--GCUCc- -3'
miRNA:   3'- -CGG-UCGGCgUaCGGGCGCuuCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 71817 0.66 0.726399
Target:  5'- -gCGGCCGaagccGCCCGCGggGUcgCGAa -3'
miRNA:   3'- cgGUCGGCgua--CGGGCGCuuCGa-GUU- -5'
24644 5' -59.3 NC_005264.1 + 13365 0.66 0.726399
Target:  5'- gGCCgAGCCGgG-GCCCGCG--GCUCc- -3'
miRNA:   3'- -CGG-UCGGCgUaCGGGCGCuuCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 74741 0.66 0.726399
Target:  5'- cGCCGGCCGacgcuGUGCCCGaCGcgcacuGCUUg- -3'
miRNA:   3'- -CGGUCGGCg----UACGGGC-GCuu----CGAGuu -5'
24644 5' -59.3 NC_005264.1 + 146964 0.66 0.726399
Target:  5'- cGCUgaGGCCGCA-GgCUGCGGAGCcuccUCGAg -3'
miRNA:   3'- -CGG--UCGGCGUaCgGGCGCUUCG----AGUU- -5'
24644 5' -59.3 NC_005264.1 + 114754 0.66 0.726399
Target:  5'- aGCgCAGCgCGUucuUGCCCuGCGccGCUCGg -3'
miRNA:   3'- -CG-GUCG-GCGu--ACGGG-CGCuuCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 27635 0.66 0.72444
Target:  5'- gGCUGGUCGCGcgaacucguuugGCCaCGCGgcGCUCGGa -3'
miRNA:   3'- -CGGUCGGCGUa-----------CGG-GCGCuuCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 59944 0.66 0.715585
Target:  5'- aGCuCGGCgGUuaucaugGUGUCCGCGccGCUCAGc -3'
miRNA:   3'- -CG-GUCGgCG-------UACGGGCGCuuCGAGUU- -5'
24644 5' -59.3 NC_005264.1 + 68230 0.67 0.706675
Target:  5'- uCCAcGCCGCAccgccaagccaUGCCCGCGccGCgggCGg -3'
miRNA:   3'- cGGU-CGGCGU-----------ACGGGCGCuuCGa--GUu -5'
24644 5' -59.3 NC_005264.1 + 64380 0.67 0.696715
Target:  5'- uGCCGGCCGgGUugacaaauCCCGCcGAGCUCc- -3'
miRNA:   3'- -CGGUCGGCgUAc-------GGGCGcUUCGAGuu -5'
24644 5' -59.3 NC_005264.1 + 125461 0.67 0.696715
Target:  5'- cCCucuGCCGCGcccUGCUCG-GAGGCUCGc -3'
miRNA:   3'- cGGu--CGGCGU---ACGGGCgCUUCGAGUu -5'
24644 5' -59.3 NC_005264.1 + 60004 0.67 0.696715
Target:  5'- -aCGGCCGCGUGgCCGCG--GCcCAAg -3'
miRNA:   3'- cgGUCGGCGUACgGGCGCuuCGaGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.