Results 1 - 20 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24658 | 3' | -61.2 | NC_005264.1 | + | 95358 | 1.1 | 0.001013 |
Target: 5'- gCCGACGGGCGGCGCGUGCCGCCAAACu -3' miRNA: 3'- -GGCUGCCCGCCGCGCACGGCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 90456 | 0.83 | 0.075607 |
Target: 5'- -aGGUGGGCGGCGCG-GCCGUCAAACa -3' miRNA: 3'- ggCUGCCCGCCGCGCaCGGCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 12952 | 0.83 | 0.079559 |
Target: 5'- gCCGuugccuacCGGGCGGCGCGcGCCGCCGacGACg -3' miRNA: 3'- -GGCu-------GCCCGCCGCGCaCGGCGGU--UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 97786 | 0.82 | 0.084993 |
Target: 5'- -gGAUGGGCGGCGCGgcguaaugaguagGCUGCCGAACc -3' miRNA: 3'- ggCUGCCCGCCGCGCa------------CGGCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 131978 | 0.81 | 0.11046 |
Target: 5'- gCCGuugccuacCGGGCGGCGCGccGCCGCCGacGACg -3' miRNA: 3'- -GGCu-------GCCCGCCGCGCa-CGGCGGU--UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 66198 | 0.78 | 0.167873 |
Target: 5'- aUCGGCGGGCGGUGCGccuccGCgGCCAGc- -3' miRNA: 3'- -GGCUGCCCGCCGCGCa----CGgCGGUUug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 69398 | 0.77 | 0.184821 |
Target: 5'- aCGAUGGGCggguaGGCGCGccUGCCGCCGu-- -3' miRNA: 3'- gGCUGCCCG-----CCGCGC--ACGGCGGUuug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 64688 | 0.76 | 0.208115 |
Target: 5'- gCCGGCGGGCaGGC-CGUGCuCGCCcGAAUc -3' miRNA: 3'- -GGCUGCCCG-CCGcGCACG-GCGG-UUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 72904 | 0.76 | 0.223277 |
Target: 5'- gCCGAUGGGCGGaaugaGCGacacguugcUGCCGUUGAGCa -3' miRNA: 3'- -GGCUGCCCGCCg----CGC---------ACGGCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 103720 | 0.76 | 0.233359 |
Target: 5'- gCGGCGGcGCGGCaucagcgGCGgcgGCCGCCAuGCu -3' miRNA: 3'- gGCUGCC-CGCCG-------CGCa--CGGCGGUuUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 25998 | 0.75 | 0.250055 |
Target: 5'- -aGACGGGUacaguaucGGCGCGUGgcuguaaUCGCCAAGCg -3' miRNA: 3'- ggCUGCCCG--------CCGCGCAC-------GGCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 148283 | 0.75 | 0.250055 |
Target: 5'- cCCGGCGGGagauucuggagacCGcGCGCGUGCgCGCCGGu- -3' miRNA: 3'- -GGCUGCCC-------------GC-CGCGCACG-GCGGUUug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 162668 | 0.75 | 0.26471 |
Target: 5'- gCCGGCGGGUcguagguguacggucGGCGCGcUGCgCGCCGGc- -3' miRNA: 3'- -GGCUGCCCG---------------CCGCGC-ACG-GCGGUUug -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 127403 | 0.75 | 0.268329 |
Target: 5'- aCCGGCGccggacGCGGCGCGUugaaGCUGCCGGAg -3' miRNA: 3'- -GGCUGCc-----CGCCGCGCA----CGGCGGUUUg -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 8376 | 0.75 | 0.268329 |
Target: 5'- aCCGGCGccggacGCGGCGCGUugaaGCUGCCGGAg -3' miRNA: 3'- -GGCUGCc-----CGCCGCGCA----CGGCGGUUUg -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 66695 | 0.74 | 0.293483 |
Target: 5'- gCCgGGCGGGgGGCGUacuacGUGUCGCCGGGg -3' miRNA: 3'- -GG-CUGCCCgCCGCG-----CACGGCGGUUUg -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 30108 | 0.74 | 0.31353 |
Target: 5'- gUCGagauGCGGGCGGCGCG-GCa-CCGAGCu -3' miRNA: 3'- -GGC----UGCCCGCCGCGCaCGgcGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 14043 | 0.73 | 0.327461 |
Target: 5'- uCCgGACGuGGCGGgGCcgggugggaacGUGCaCGCCAGACu -3' miRNA: 3'- -GG-CUGC-CCGCCgCG-----------CACG-GCGGUUUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 90965 | 0.73 | 0.327461 |
Target: 5'- gCGuCGGGCGccCGCGUGCCGUCGcggAACa -3' miRNA: 3'- gGCuGCCCGCc-GCGCACGGCGGU---UUG- -5' |
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24658 | 3' | -61.2 | NC_005264.1 | + | 91027 | 0.73 | 0.341845 |
Target: 5'- cCCG-CGGGCGGCuuCG-GCCGCUAuGCg -3' miRNA: 3'- -GGCuGCCCGCCGc-GCaCGGCGGUuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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