miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24663 3' -49 NC_005264.1 + 108362 0.66 0.999305
Target:  5'- aGGGAUgacaUGgGCGAC--GACGGCCCUu -3'
miRNA:   3'- aCUUUAa---ACaUGCUGgcUUGCCGGGA- -5'
24663 3' -49 NC_005264.1 + 141624 0.66 0.999305
Target:  5'- gGAAAgccGUcGCGGCCGAaaguaccacuGCGGCCg- -3'
miRNA:   3'- aCUUUaaaCA-UGCUGGCU----------UGCCGGga -5'
24663 3' -49 NC_005264.1 + 13501 0.66 0.99929
Target:  5'- gGGGAUg---GCGGuaaaucguccaacUCGAACGGCCCg -3'
miRNA:   3'- aCUUUAaacaUGCU-------------GGCUUGCCGGGa -5'
24663 3' -49 NC_005264.1 + 51599 0.66 0.999144
Target:  5'- gUGAAagaugGUUUGUAUGGCCGGGgagguguaGGCCg- -3'
miRNA:   3'- -ACUU-----UAAACAUGCUGGCUUg-------CCGGga -5'
24663 3' -49 NC_005264.1 + 105820 0.66 0.999144
Target:  5'- gGAAAUgguuaugGUAuCGGCgGAACGGUUCUc -3'
miRNA:   3'- aCUUUAaa-----CAU-GCUGgCUUGCCGGGA- -5'
24663 3' -49 NC_005264.1 + 4290 0.66 0.999144
Target:  5'- ------aUGgcUGGCCaguaaGAGCGGCCCUg -3'
miRNA:   3'- acuuuaaACauGCUGG-----CUUGCCGGGA- -5'
24663 3' -49 NC_005264.1 + 136239 0.66 0.999144
Target:  5'- cGAGGUg---GCGACgGAcACGGCUCa -3'
miRNA:   3'- aCUUUAaacaUGCUGgCU-UGCCGGGa -5'
24663 3' -49 NC_005264.1 + 146421 0.66 0.999144
Target:  5'- ---------cGCGGCaguCGAGCGGCCCUu -3'
miRNA:   3'- acuuuaaacaUGCUG---GCUUGCCGGGA- -5'
24663 3' -49 NC_005264.1 + 143863 0.66 0.999144
Target:  5'- cGGAug-UGUgcccggGCGAUCGuuuccGCGGCCCa -3'
miRNA:   3'- aCUUuaaACA------UGCUGGCu----UGCCGGGa -5'
24663 3' -49 NC_005264.1 + 37121 0.66 0.998953
Target:  5'- cGAGGgcgagGCGGCCGucuCGGCCUc -3'
miRNA:   3'- aCUUUaaacaUGCUGGCuu-GCCGGGa -5'
24663 3' -49 NC_005264.1 + 156148 0.66 0.998953
Target:  5'- cGAGGgcgagGCGGCCGucuCGGCCUc -3'
miRNA:   3'- aCUUUaaacaUGCUGGCuu-GCCGGGa -5'
24663 3' -49 NC_005264.1 + 5265 0.66 0.998458
Target:  5'- gGGAGgcgaGUcGCGGCCGGACGGCg-- -3'
miRNA:   3'- aCUUUaaa-CA-UGCUGGCUUGCCGgga -5'
24663 3' -49 NC_005264.1 + 20632 0.66 0.998458
Target:  5'- aGggGcacUGgGCGACCGuugGCGGUCCa -3'
miRNA:   3'- aCuuUaa-ACaUGCUGGCu--UGCCGGGa -5'
24663 3' -49 NC_005264.1 + 124292 0.66 0.998458
Target:  5'- gGGAGgcgaGUcGCGGCCGGACGGCg-- -3'
miRNA:   3'- aCUUUaaa-CA-UGCUGGCUUGCCGgga -5'
24663 3' -49 NC_005264.1 + 30908 0.66 0.998458
Target:  5'- gGGGAggacUGCGagGCCGGGCGGCUCg -3'
miRNA:   3'- aCUUUaaacAUGC--UGGCUUGCCGGGa -5'
24663 3' -49 NC_005264.1 + 149934 0.66 0.998458
Target:  5'- gGGGAggacUGCGagGCCGGGCGGCUCg -3'
miRNA:   3'- aCUUUaaacAUGC--UGGCUUGCCGGGa -5'
24663 3' -49 NC_005264.1 + 135237 0.67 0.998276
Target:  5'- ------cUGUgACGACCGugaagauggaaacgaGGCGGCCCa -3'
miRNA:   3'- acuuuaaACA-UGCUGGC---------------UUGCCGGGa -5'
24663 3' -49 NC_005264.1 + 27973 0.67 0.997779
Target:  5'- gGAAAcgcgUGacgACGACCGccguagccGCGGCCCa -3'
miRNA:   3'- aCUUUaa--ACa--UGCUGGCu-------UGCCGGGa -5'
24663 3' -49 NC_005264.1 + 18666 0.67 0.997355
Target:  5'- aUGAGGUcacaugGUGCGAuuCCGGACaccccauuGGCCCa -3'
miRNA:   3'- -ACUUUAaa----CAUGCU--GGCUUG--------CCGGGa -5'
24663 3' -49 NC_005264.1 + 28429 0.67 0.997355
Target:  5'- -------gGUAgGACCGAACGGCagCUg -3'
miRNA:   3'- acuuuaaaCAUgCUGGCUUGCCGg-GA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.