miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24673 3' -56.2 NC_005264.1 + 13319 0.66 0.914341
Target:  5'- -----aCGGCCg-CGCGGAGcaggaggagagGGGCGCg -3'
miRNA:   3'- guuagaGCCGGagGCGCCUU-----------UCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 122031 0.66 0.882142
Target:  5'- gAGUCUCGGCgaccCCGCGGcAAGcGGCu- -3'
miRNA:   3'- gUUAGAGCCGga--GGCGCC-UUU-CCGug -5'
24673 3' -56.2 NC_005264.1 + 37136 0.66 0.882142
Target:  5'- -cGUCUCGGCCUC-GCuGcu-GGCGCc -3'
miRNA:   3'- guUAGAGCCGGAGgCGcCuuuCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 35009 0.66 0.882142
Target:  5'- -----cCGGCCgCCGCGGA--GGCAa -3'
miRNA:   3'- guuagaGCCGGaGGCGCCUuuCCGUg -5'
24673 3' -56.2 NC_005264.1 + 156163 0.66 0.882142
Target:  5'- -cGUCUCGGCCUC-GCuGcu-GGCGCc -3'
miRNA:   3'- guUAGAGCCGGAGgCGcCuuuCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 120234 0.66 0.882142
Target:  5'- -cGUCcgCGGCCauggCUGCGGGGuuGCACa -3'
miRNA:   3'- guUAGa-GCCGGa---GGCGCCUUucCGUG- -5'
24673 3' -56.2 NC_005264.1 + 64676 0.66 0.889041
Target:  5'- gGGUUUgGGCCUgCCgGCGGgcAGGC-Cg -3'
miRNA:   3'- gUUAGAgCCGGA-GG-CGCCuuUCCGuG- -5'
24673 3' -56.2 NC_005264.1 + 159254 0.66 0.895714
Target:  5'- gUAAUUcuUCGcGCCUCCuggcguuacGCGGAGGaaguGGCACg -3'
miRNA:   3'- -GUUAG--AGC-CGGAGG---------CGCCUUU----CCGUG- -5'
24673 3' -56.2 NC_005264.1 + 18562 0.66 0.902157
Target:  5'- uCAGUCggagCGGCaUCCGCcGGcccAAGGCAg -3'
miRNA:   3'- -GUUAGa---GCCGgAGGCG-CCu--UUCCGUg -5'
24673 3' -56.2 NC_005264.1 + 1207 0.66 0.882142
Target:  5'- -cGUCcgCGGCCauggCUGCGGGGuuGCACa -3'
miRNA:   3'- guUAGa-GCCGGa---GGCGCCUUucCGUG- -5'
24673 3' -56.2 NC_005264.1 + 66430 0.66 0.893736
Target:  5'- gAAUCUCGcuaacgauucgggcGCUUCCGauggGGAGAuGGCACc -3'
miRNA:   3'- gUUAGAGC--------------CGGAGGCg---CCUUU-CCGUG- -5'
24673 3' -56.2 NC_005264.1 + 40227 0.66 0.895714
Target:  5'- gUAAUUcuUCGcGCCUCCuggcguuacGCGGAGGaaguGGCACg -3'
miRNA:   3'- -GUUAG--AGC-CGGAGG---------CGCCUUU----CCGUG- -5'
24673 3' -56.2 NC_005264.1 + 5067 0.66 0.914341
Target:  5'- gGGUCgcaaggCGGCCagcccgUCCGgGGAGGGGUc- -3'
miRNA:   3'- gUUAGa-----GCCGG------AGGCgCCUUUCCGug -5'
24673 3' -56.2 NC_005264.1 + 84203 0.66 0.914341
Target:  5'- ---aCagGGCCgCCGCGGcgguuaacagaAGAGGCGCc -3'
miRNA:   3'- guuaGagCCGGaGGCGCC-----------UUUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 41394 0.66 0.913165
Target:  5'- -uGUCcgCGGCCUCCGCuuucuuccuAGGCAg -3'
miRNA:   3'- guUAGa-GCCGGAGGCGccuu-----UCCGUg -5'
24673 3' -56.2 NC_005264.1 + 68438 0.66 0.908367
Target:  5'- gCAGUCcgcgccgCGGUCUgCGCGcGGAGGGCc- -3'
miRNA:   3'- -GUUAGa------GCCGGAgGCGC-CUUUCCGug -5'
24673 3' -56.2 NC_005264.1 + 5272 0.66 0.908367
Target:  5'- gAGUCgCGGCCggaCgGCGGGgcGGCGg -3'
miRNA:   3'- gUUAGaGCCGGa--GgCGCCUuuCCGUg -5'
24673 3' -56.2 NC_005264.1 + 16490 0.66 0.902157
Target:  5'- -----gUGGCCUgCGgGGucGAGGCACg -3'
miRNA:   3'- guuagaGCCGGAgGCgCCu-UUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 13608 0.66 0.902157
Target:  5'- gCGAUCgCGGUCgggaCGCGGgcAGGgGCg -3'
miRNA:   3'- -GUUAGaGCCGGag--GCGCCuuUCCgUG- -5'
24673 3' -56.2 NC_005264.1 + 98305 0.66 0.902157
Target:  5'- -uAUCgCGGaaccccCCUCCGCGGc--GGCGCg -3'
miRNA:   3'- guUAGaGCC------GGAGGCGCCuuuCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.