miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24673 3' -56.2 NC_005264.1 + 1207 0.66 0.882142
Target:  5'- -cGUCcgCGGCCauggCUGCGGGGuuGCACa -3'
miRNA:   3'- guUAGa-GCCGGa---GGCGCCUUucCGUG- -5'
24673 3' -56.2 NC_005264.1 + 1440 0.7 0.676216
Target:  5'- ------gGGCCUCCGCGGGAGccaGCACc -3'
miRNA:   3'- guuagagCCGGAGGCGCCUUUc--CGUG- -5'
24673 3' -56.2 NC_005264.1 + 3121 0.67 0.870644
Target:  5'- aGGUCUCGGUuucucguacacauguCaUCCGUGGGcAGGGCAa -3'
miRNA:   3'- gUUAGAGCCG---------------G-AGGCGCCU-UUCCGUg -5'
24673 3' -56.2 NC_005264.1 + 3689 0.66 0.914341
Target:  5'- ------gGGCCUggCGCGGAAAgGGCGCa -3'
miRNA:   3'- guuagagCCGGAg-GCGCCUUU-CCGUG- -5'
24673 3' -56.2 NC_005264.1 + 4254 0.67 0.867683
Target:  5'- uCAGUCcCGGCUUgccgcgcgggaaCCGCGGGgcGGCGg -3'
miRNA:   3'- -GUUAGaGCCGGA------------GGCGCCUuuCCGUg -5'
24673 3' -56.2 NC_005264.1 + 4515 0.72 0.614927
Target:  5'- ---aCUgGGCgUCCGCGGAGGGGgAg -3'
miRNA:   3'- guuaGAgCCGgAGGCGCCUUUCCgUg -5'
24673 3' -56.2 NC_005264.1 + 5002 0.69 0.778212
Target:  5'- --uUCUCGuccgcGCCggggucgCCGCGGAguacgucaccgggacGAGGCACg -3'
miRNA:   3'- guuAGAGC-----CGGa------GGCGCCU---------------UUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 5067 0.66 0.914341
Target:  5'- gGGUCgcaaggCGGCCagcccgUCCGgGGAGGGGUc- -3'
miRNA:   3'- gUUAGa-----GCCGG------AGGCgCCUUUCCGug -5'
24673 3' -56.2 NC_005264.1 + 5272 0.66 0.908367
Target:  5'- gAGUCgCGGCCggaCgGCGGGgcGGCGg -3'
miRNA:   3'- gUUAGaGCCGGa--GgCGCCUuuCCGUg -5'
24673 3' -56.2 NC_005264.1 + 5508 0.73 0.534159
Target:  5'- --cUCgUCGGCCUCCGCG--AAGGCGu -3'
miRNA:   3'- guuAG-AGCCGGAGGCGCcuUUCCGUg -5'
24673 3' -56.2 NC_005264.1 + 6000 0.7 0.686354
Target:  5'- gAGUCgUCGGCC-CCgacggGCGGGGAGGCu- -3'
miRNA:   3'- gUUAG-AGCCGGaGG-----CGCCUUUCCGug -5'
24673 3' -56.2 NC_005264.1 + 6729 0.71 0.666042
Target:  5'- -cGUCgCGGUaCUCCGCGGcguGGCGCg -3'
miRNA:   3'- guUAGaGCCG-GAGGCGCCuuuCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 13319 0.66 0.914341
Target:  5'- -----aCGGCCg-CGCGGAGcaggaggagagGGGCGCg -3'
miRNA:   3'- guuagaGCCGGagGCGCCUU-----------UCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 13608 0.66 0.902157
Target:  5'- gCGAUCgCGGUCgggaCGCGGgcAGGgGCg -3'
miRNA:   3'- -GUUAGaGCCGGag--GCGCCuuUCCgUG- -5'
24673 3' -56.2 NC_005264.1 + 16490 0.66 0.902157
Target:  5'- -----gUGGCCUgCGgGGucGAGGCACg -3'
miRNA:   3'- guuagaGCCGGAgGCgCCu-UUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 18562 0.66 0.902157
Target:  5'- uCAGUCggagCGGCaUCCGCcGGcccAAGGCAg -3'
miRNA:   3'- -GUUAGa---GCCGgAGGCG-CCu--UUCCGUg -5'
24673 3' -56.2 NC_005264.1 + 20257 0.66 0.908367
Target:  5'- gGGUUgcggcgCGGCCU-CGCGGAGGGG-ACc -3'
miRNA:   3'- gUUAGa-----GCCGGAgGCGCCUUUCCgUG- -5'
24673 3' -56.2 NC_005264.1 + 29448 0.69 0.783763
Target:  5'- gCAGUCcucggUCGGCCcCaCGCGGAuuGGGGgGCg -3'
miRNA:   3'- -GUUAG-----AGCCGGaG-GCGCCU--UUCCgUG- -5'
24673 3' -56.2 NC_005264.1 + 35009 0.66 0.882142
Target:  5'- -----cCGGCCgCCGCGGA--GGCAa -3'
miRNA:   3'- guuagaGCCGGaGGCGCCUuuCCGUg -5'
24673 3' -56.2 NC_005264.1 + 37136 0.66 0.882142
Target:  5'- -cGUCUCGGCCUC-GCuGcu-GGCGCc -3'
miRNA:   3'- guUAGAGCCGGAGgCGcCuuuCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.