miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24673 3' -56.2 NC_005264.1 + 106100 1.1 0.002408
Target:  5'- cCAAUCUCGGCCUCCGCGGAAAGGCACg -3'
miRNA:   3'- -GUUAGAGCCGGAGGCGCCUUUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 100555 0.68 0.792906
Target:  5'- -----aCGGCCgagaUCGCGGGAcaaGGGCGCa -3'
miRNA:   3'- guuagaGCCGGa---GGCGCCUU---UCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 117688 0.67 0.836275
Target:  5'- --cUCUCcuGCCUCCGCGucguGGCGCc -3'
miRNA:   3'- guuAGAGc-CGGAGGCGCcuuuCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 132346 0.66 0.914341
Target:  5'- -----aCGGCCg-CGCGGAGcaggaggagagGGGCGCg -3'
miRNA:   3'- guuagaGCCGGagGCGCCUU-----------UCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 82355 0.72 0.58435
Target:  5'- --cUCUCGGCCUUgGCGGcGAAGcggaGCACu -3'
miRNA:   3'- guuAGAGCCGGAGgCGCC-UUUC----CGUG- -5'
24673 3' -56.2 NC_005264.1 + 123542 0.72 0.614927
Target:  5'- ---aCUgGGCgUCCGCGGAGGGGgAg -3'
miRNA:   3'- guuaGAgCCGgAGGCGCCUUUCCgUg -5'
24673 3' -56.2 NC_005264.1 + 54182 0.71 0.666042
Target:  5'- cCAAcCUC-GCCUCgGCGGuAAGGUACg -3'
miRNA:   3'- -GUUaGAGcCGGAGgCGCCuUUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 120467 0.7 0.676216
Target:  5'- ------gGGCCUCCGCGGGAGccaGCACc -3'
miRNA:   3'- guuagagCCGGAGGCGCCUUUc--CGUG- -5'
24673 3' -56.2 NC_005264.1 + 42290 0.69 0.73619
Target:  5'- uCGAUUUCGGCUUCCGgGGccgucgcAGGGCu- -3'
miRNA:   3'- -GUUAGAGCCGGAGGCgCCu------UUCCGug -5'
24673 3' -56.2 NC_005264.1 + 98225 0.68 0.791998
Target:  5'- -cGUCg-GGCCgcgCUGCGGAGagguuauGGGCGCa -3'
miRNA:   3'- guUAGagCCGGa--GGCGCCUU-------UCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 60885 0.69 0.765079
Target:  5'- --cUCUCGGCguacgCCGCGGugGGGC-Cg -3'
miRNA:   3'- guuAGAGCCGga---GGCGCCuuUCCGuG- -5'
24673 3' -56.2 NC_005264.1 + 79545 0.69 0.73619
Target:  5'- uGAUCU-GGCCgcaCCGCGGcAAGGCcuuGCg -3'
miRNA:   3'- gUUAGAgCCGGa--GGCGCCuUUCCG---UG- -5'
24673 3' -56.2 NC_005264.1 + 98533 0.75 0.448279
Target:  5'- -uGUUUCuGGCCUCUGCGGA--GGCAUg -3'
miRNA:   3'- guUAGAG-CCGGAGGCGCCUuuCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 61741 0.69 0.774485
Target:  5'- aGGUgUCGGCCacUCC-UGGGAAGGCGa -3'
miRNA:   3'- gUUAgAGCCGG--AGGcGCCUUUCCGUg -5'
24673 3' -56.2 NC_005264.1 + 124535 0.73 0.534159
Target:  5'- --cUCgUCGGCCUCCGCG--AAGGCGu -3'
miRNA:   3'- guuAG-AGCCGGAGGCGCcuUUCCGUg -5'
24673 3' -56.2 NC_005264.1 + 125027 0.7 0.686354
Target:  5'- gAGUCgUCGGCC-CCgacggGCGGGGAGGCu- -3'
miRNA:   3'- gUUAG-AGCCGGaGG-----CGCCUUUCCGug -5'
24673 3' -56.2 NC_005264.1 + 124029 0.69 0.778212
Target:  5'- --uUCUCGuccgcGCCggggucgCCGCGGAguacgucaccgggacGAGGCACg -3'
miRNA:   3'- guuAGAGC-----CGGa------GGCGCCU---------------UUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 59454 0.68 0.827941
Target:  5'- -uGUCaaagCGGCC-CCGCGcGgcAGGCAUg -3'
miRNA:   3'- guUAGa---GCCGGaGGCGC-CuuUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 63070 0.72 0.574217
Target:  5'- uCGGUCUCcagcucggcgagGGCCgUCGCGGAAAGGCc- -3'
miRNA:   3'- -GUUAGAG------------CCGGaGGCGCCUUUCCGug -5'
24673 3' -56.2 NC_005264.1 + 6729 0.71 0.666042
Target:  5'- -cGUCgCGGUaCUCCGCGGcguGGCGCg -3'
miRNA:   3'- guUAGaGCCG-GAGGCGCCuuuCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.