miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24673 3' -56.2 NC_005264.1 + 106100 1.1 0.002408
Target:  5'- cCAAUCUCGGCCUCCGCGGAAAGGCACg -3'
miRNA:   3'- -GUUAGAGCCGGAGGCGCCUUUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 98533 0.75 0.448279
Target:  5'- -uGUUUCuGGCCUCUGCGGA--GGCAUg -3'
miRNA:   3'- guUAGAG-CCGGAGGCGCCUuuCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 124535 0.73 0.534159
Target:  5'- --cUCgUCGGCCUCCGCG--AAGGCGu -3'
miRNA:   3'- guuAG-AGCCGGAGGCGCcuUUCCGUg -5'
24673 3' -56.2 NC_005264.1 + 5508 0.73 0.534159
Target:  5'- --cUCgUCGGCCUCCGCG--AAGGCGu -3'
miRNA:   3'- guuAG-AGCCGGAGGCGCcuUUCCGUg -5'
24673 3' -56.2 NC_005264.1 + 63070 0.72 0.574217
Target:  5'- uCGGUCUCcagcucggcgagGGCCgUCGCGGAAAGGCc- -3'
miRNA:   3'- -GUUAGAG------------CCGGaGGCGCCUUUCCGug -5'
24673 3' -56.2 NC_005264.1 + 82355 0.72 0.58435
Target:  5'- --cUCUCGGCCUUgGCGGcGAAGcggaGCACu -3'
miRNA:   3'- guuAGAGCCGGAGgCGCC-UUUC----CGUG- -5'
24673 3' -56.2 NC_005264.1 + 47799 0.72 0.604712
Target:  5'- ---cCUCGGCUUUCGcCGGGgcgcauAAGGCGCa -3'
miRNA:   3'- guuaGAGCCGGAGGC-GCCU------UUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 123542 0.72 0.614927
Target:  5'- ---aCUgGGCgUCCGCGGAGGGGgAg -3'
miRNA:   3'- guuaGAgCCGgAGGCGCCUUUCCgUg -5'
24673 3' -56.2 NC_005264.1 + 4515 0.72 0.614927
Target:  5'- ---aCUgGGCgUCCGCGGAGGGGgAg -3'
miRNA:   3'- guuaGAgCCGgAGGCGCCUUUCCgUg -5'
24673 3' -56.2 NC_005264.1 + 54182 0.71 0.666042
Target:  5'- cCAAcCUC-GCCUCgGCGGuAAGGUACg -3'
miRNA:   3'- -GUUaGAGcCGGAGgCGCCuUUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 6729 0.71 0.666042
Target:  5'- -cGUCgCGGUaCUCCGCGGcguGGCGCg -3'
miRNA:   3'- guUAGaGCCG-GAGGCGCCuuuCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 1440 0.7 0.676216
Target:  5'- ------gGGCCUCCGCGGGAGccaGCACc -3'
miRNA:   3'- guuagagCCGGAGGCGCCUUUc--CGUG- -5'
24673 3' -56.2 NC_005264.1 + 120467 0.7 0.676216
Target:  5'- ------gGGCCUCCGCGGGAGccaGCACc -3'
miRNA:   3'- guuagagCCGGAGGCGCCUUUc--CGUG- -5'
24673 3' -56.2 NC_005264.1 + 122063 0.7 0.676216
Target:  5'- --cUCUCGGCg-CCGCGGAAgauguaGGGgACa -3'
miRNA:   3'- guuAGAGCCGgaGGCGCCUU------UCCgUG- -5'
24673 3' -56.2 NC_005264.1 + 117221 0.7 0.686354
Target:  5'- aCGAUacuuaccgCGGCCUCUGCGGgcGGGUgauGCa -3'
miRNA:   3'- -GUUAga------GCCGGAGGCGCCuuUCCG---UG- -5'
24673 3' -56.2 NC_005264.1 + 6000 0.7 0.686354
Target:  5'- gAGUCgUCGGCC-CCgacggGCGGGGAGGCu- -3'
miRNA:   3'- gUUAG-AGCCGGaGG-----CGCCUUUCCGug -5'
24673 3' -56.2 NC_005264.1 + 125027 0.7 0.686354
Target:  5'- gAGUCgUCGGCC-CCgacggGCGGGGAGGCu- -3'
miRNA:   3'- gUUAG-AGCCGGaGG-----CGCCUUUCCGug -5'
24673 3' -56.2 NC_005264.1 + 79990 0.7 0.686354
Target:  5'- cCGAUgC-CGGCCg-CGCGGAagagGAGGCGCg -3'
miRNA:   3'- -GUUA-GaGCCGGagGCGCCU----UUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 42290 0.69 0.73619
Target:  5'- uCGAUUUCGGCUUCCGgGGccgucgcAGGGCu- -3'
miRNA:   3'- -GUUAGAGCCGGAGGCgCCu------UUCCGug -5'
24673 3' -56.2 NC_005264.1 + 79545 0.69 0.73619
Target:  5'- uGAUCU-GGCCgcaCCGCGGcAAGGCcuuGCg -3'
miRNA:   3'- gUUAGAgCCGGa--GGCGCCuUUCCG---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.