miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24673 5' -60.7 NC_005264.1 + 156607 0.73 0.293969
Target:  5'- aGGCGGCaaGUCuCGCGGCG-GCCg- -3'
miRNA:   3'- aCCGUCGaaCAGcGCGCCGCuCGGaa -5'
24673 5' -60.7 NC_005264.1 + 150539 0.67 0.636876
Target:  5'- aGGCGGCUccagGcUCGgGCGGggaGGGCCg- -3'
miRNA:   3'- aCCGUCGAa---C-AGCgCGCCg--CUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 149422 0.67 0.606667
Target:  5'- cGGCGGCggcgGUCGCGCgccGGUgcggaGAGCUg- -3'
miRNA:   3'- aCCGUCGaa--CAGCGCG---CCG-----CUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 148479 0.66 0.686047
Target:  5'- cGGCGGCUagacUaugggacgcgcugGUCGCguugGCGGCGAGCg-- -3'
miRNA:   3'- aCCGUCGA----A-------------CAGCG----CGCCGCUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 146322 0.69 0.479813
Target:  5'- aGGCGuGCUUGUaccauccgucUGCGcCGGCGuGCCUc -3'
miRNA:   3'- aCCGU-CGAACA----------GCGC-GCCGCuCGGAa -5'
24673 5' -60.7 NC_005264.1 + 145922 0.74 0.255724
Target:  5'- cGGCGGCggGUCaGCGCGGgcaUGGGCCUc -3'
miRNA:   3'- aCCGUCGaaCAG-CGCGCC---GCUCGGAa -5'
24673 5' -60.7 NC_005264.1 + 139126 0.66 0.687043
Target:  5'- cGGCAGCagaUUGuUCGUGUGGCccgcguGCCUc -3'
miRNA:   3'- aCCGUCG---AAC-AGCGCGCCGcu----CGGAa -5'
24673 5' -60.7 NC_005264.1 + 132102 0.69 0.489168
Target:  5'- cUGaGCGGCUcuUUGCGCGGgaaGAGCCUc -3'
miRNA:   3'- -AC-CGUCGAacAGCGCGCCg--CUCGGAa -5'
24673 5' -60.7 NC_005264.1 + 124321 0.68 0.527393
Target:  5'- cGGCGGCUgaccCGUGgGGCGGGCg-- -3'
miRNA:   3'- aCCGUCGAaca-GCGCgCCGCUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 124087 0.66 0.657009
Target:  5'- cUGGCAGgg-GUCGCaagGCGGCcAGCCc- -3'
miRNA:   3'- -ACCGUCgaaCAGCG---CGCCGcUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 123168 0.7 0.434429
Target:  5'- cGGCcGCUUGUCGCGauGCuuGCCg- -3'
miRNA:   3'- aCCGuCGAACAGCGCgcCGcuCGGaa -5'
24673 5' -60.7 NC_005264.1 + 121545 0.66 0.687043
Target:  5'- gGGCcgauAGCguggaaGUCGaCGCgGGCGGGCCg- -3'
miRNA:   3'- aCCG----UCGaa----CAGC-GCG-CCGCUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 115727 0.67 0.586608
Target:  5'- cGGCauGGUagGggGCGCGGCGAGCgCUa -3'
miRNA:   3'- aCCG--UCGaaCagCGCGCCGCUCG-GAa -5'
24673 5' -60.7 NC_005264.1 + 107208 0.67 0.636876
Target:  5'- aGGCGGCggcgCGCGCGGUuGGCa-- -3'
miRNA:   3'- aCCGUCGaacaGCGCGCCGcUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 106136 1.06 0.001535
Target:  5'- aUGGCAGCUUGUCGCGCGGCGAGCCUUa -3'
miRNA:   3'- -ACCGUCGAACAGCGCGCCGCUCGGAA- -5'
24673 5' -60.7 NC_005264.1 + 98678 0.69 0.516762
Target:  5'- cUGGCGgcGCUUGcacaccggccggaUCGCggcgccGUGGCGAGCCUg -3'
miRNA:   3'- -ACCGU--CGAAC-------------AGCG------CGCCGCUCGGAa -5'
24673 5' -60.7 NC_005264.1 + 98535 0.7 0.443309
Target:  5'- uUGGCAGCggcaaCGCGCuGUGGGCCg- -3'
miRNA:   3'- -ACCGUCGaaca-GCGCGcCGCUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 96211 0.69 0.517725
Target:  5'- uUGGCAGCUUGccUCGgGCcGCGAcggcGCCg- -3'
miRNA:   3'- -ACCGUCGAAC--AGCgCGcCGCU----CGGaa -5'
24673 5' -60.7 NC_005264.1 + 91904 0.67 0.596625
Target:  5'- cGGCAGCgaugGgcggGCGCGGCGA-CCa- -3'
miRNA:   3'- aCCGUCGaa--Cag--CGCGCCGCUcGGaa -5'
24673 5' -60.7 NC_005264.1 + 89926 0.66 0.683056
Target:  5'- cGGCAGCaacgUGUCGCucauuccgcccauCGGCG-GCCg- -3'
miRNA:   3'- aCCGUCGa---ACAGCGc------------GCCGCuCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.