miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 157395 0.66 0.942136
Target:  5'- ---cUGCGCAUGCuGUacgGCGCgGCGUUGg -3'
miRNA:   3'- cuuaGCGCGUGCG-CAa--CGCG-UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 156686 0.71 0.739727
Target:  5'- ---aCGUGCACGCGaUGCGCgACGggCGc -3'
miRNA:   3'- cuuaGCGCGUGCGCaACGCG-UGCa-GC- -5'
24676 5' -54.9 NC_005264.1 + 154917 0.67 0.929426
Target:  5'- cGAcgCGUggacGCGCGCGUUGCuagccagagcgugggGgACGUCGu -3'
miRNA:   3'- -CUuaGCG----CGUGCGCAACG---------------CgUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 154227 0.66 0.942136
Target:  5'- ----aGCGCcuaccgguGCGCGUUGCggaggaacacGCGCGUCu -3'
miRNA:   3'- cuuagCGCG--------UGCGCAACG----------CGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 152522 0.66 0.95083
Target:  5'- ---cCGCGCuuGCucaGUGCGCGUCGc -3'
miRNA:   3'- cuuaGCGCGugCGcaaCGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 152014 0.71 0.758992
Target:  5'- --cUCGCGCAuauCGCcaucggGCGCugGUCGg -3'
miRNA:   3'- cuuAGCGCGU---GCGcaa---CGCGugCAGC- -5'
24676 5' -54.9 NC_005264.1 + 150735 0.71 0.749411
Target:  5'- aGGUCGCGCGCgggGCGUacuUGUuCGCGUCGu -3'
miRNA:   3'- cUUAGCGCGUG---CGCA---ACGcGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 150072 0.71 0.739727
Target:  5'- cGGUCGUGCGgcUGCGUUGCGgACGgcaggCGa -3'
miRNA:   3'- cUUAGCGCGU--GCGCAACGCgUGCa----GC- -5'
24676 5' -54.9 NC_005264.1 + 149657 0.68 0.891313
Target:  5'- cGGAUC-CGCGCGCagcGCGUAgGUCGu -3'
miRNA:   3'- -CUUAGcGCGUGCGcaaCGCGUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 148503 0.69 0.862742
Target:  5'- uGGUCGCGUugGCGgcgaGCGC-CG-CGg -3'
miRNA:   3'- cUUAGCGCGugCGCaa--CGCGuGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 147696 0.69 0.822424
Target:  5'- -cAUCGcCGCACGCGaUUGCcCGUGUCGg -3'
miRNA:   3'- cuUAGC-GCGUGCGC-AACGcGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 145113 0.69 0.830862
Target:  5'- aGGUUGCGC-CGCGgcGCGCAgGUa- -3'
miRNA:   3'- cUUAGCGCGuGCGCaaCGCGUgCAgc -5'
24676 5' -54.9 NC_005264.1 + 144982 0.66 0.95083
Target:  5'- cGAUUGCuCACGCGgucgaacaGCGCGCG-CGa -3'
miRNA:   3'- cUUAGCGcGUGCGCaa------CGCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 143882 0.67 0.927328
Target:  5'- aAGUCG-GCGCgGCGg-GCGCaACGUCGa -3'
miRNA:   3'- cUUAGCgCGUG-CGCaaCGCG-UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 136879 0.67 0.904256
Target:  5'- cAAUCGUGCACaCGUccGCGC-CGUCc -3'
miRNA:   3'- cUUAGCGCGUGcGCAa-CGCGuGCAGc -5'
24676 5' -54.9 NC_005264.1 + 134789 0.7 0.805037
Target:  5'- ---cCGCGCGCuuuuacccgGCGUcGCGCGCGcCGg -3'
miRNA:   3'- cuuaGCGCGUG---------CGCAaCGCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 133557 0.68 0.8979
Target:  5'- -cGUCGagGCACGCGcccGCGCACaGUCc -3'
miRNA:   3'- cuUAGCg-CGUGCGCaa-CGCGUG-CAGc -5'
24676 5' -54.9 NC_005264.1 + 131601 0.72 0.700148
Target:  5'- gGAGggaGCgGCGCGCGUggGCGCGCG-CGg -3'
miRNA:   3'- -CUUag-CG-CGUGCGCAa-CGCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 130550 0.72 0.669833
Target:  5'- -cGUCGCgGCGCGUGUgcuacGCGCAgGUCu -3'
miRNA:   3'- cuUAGCG-CGUGCGCAa----CGCGUgCAGc -5'
24676 5' -54.9 NC_005264.1 + 128574 0.67 0.916266
Target:  5'- cGGAgCGCaGCACGCGgauuaccgcGCGCACGaggCGg -3'
miRNA:   3'- -CUUaGCG-CGUGCGCaa-------CGCGUGCa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.