miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 56925 0.67 0.904256
Target:  5'- ----gGCGUACGUGcgugGCGCACGgggCGa -3'
miRNA:   3'- cuuagCGCGUGCGCaa--CGCGUGCa--GC- -5'
24676 5' -54.9 NC_005264.1 + 122580 0.67 0.932502
Target:  5'- ---gCGcCGCAcCGCGUUGggguacCGCACGUCc -3'
miRNA:   3'- cuuaGC-GCGU-GCGCAAC------GCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 59014 0.67 0.932502
Target:  5'- aGAAUCGCGgAgGCaGgcGCGuCAgGUCGg -3'
miRNA:   3'- -CUUAGCGCgUgCG-CaaCGC-GUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 154917 0.67 0.929426
Target:  5'- cGAcgCGUggacGCGCGCGUUGCuagccagagcgugggGgACGUCGu -3'
miRNA:   3'- -CUuaGCG----CGUGCGCAACG---------------CgUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 103015 0.67 0.921916
Target:  5'- ---gCGCGCugGCGUacGCGacccuCACGUCu -3'
miRNA:   3'- cuuaGCGCGugCGCAa-CGC-----GUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 128574 0.67 0.916266
Target:  5'- cGGAgCGCaGCACGCGgauuaccgcGCGCACGaggCGg -3'
miRNA:   3'- -CUUaGCG-CGUGCGCaa-------CGCGUGCa--GC- -5'
24676 5' -54.9 NC_005264.1 + 81305 0.67 0.916266
Target:  5'- ---cCGCGCA-GCGUgcaUGUGUAUGUCa -3'
miRNA:   3'- cuuaGCGCGUgCGCA---ACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 67737 0.67 0.910379
Target:  5'- -cGUgGCGCcuuCGCGUaucucgGCGCAgGUCGc -3'
miRNA:   3'- cuUAgCGCGu--GCGCAa-----CGCGUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 136879 0.67 0.904256
Target:  5'- cAAUCGUGCACaCGUccGCGC-CGUCc -3'
miRNA:   3'- cUUAGCGCGUGcGCAa-CGCGuGCAGc -5'
24676 5' -54.9 NC_005264.1 + 29659 0.67 0.932502
Target:  5'- cGGUC-CGC-CGCGUUGCGUagcaucagggaGCGUCc -3'
miRNA:   3'- cUUAGcGCGuGCGCAACGCG-----------UGCAGc -5'
24676 5' -54.9 NC_005264.1 + 126304 0.66 0.941215
Target:  5'- --uUCGgGCGCGCGgccgauggcuccUGCGCccgccuCGUCGa -3'
miRNA:   3'- cuuAGCgCGUGCGCa-----------ACGCGu-----GCAGC- -5'
24676 5' -54.9 NC_005264.1 + 61537 0.66 0.942136
Target:  5'- -uAUCGCGCugGgcauaGcUG-GCACGUCGg -3'
miRNA:   3'- cuUAGCGCGugCg----CaACgCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 66320 0.66 0.95483
Target:  5'- -uGUUGCGCG-GCGUcGUGCAUGUUu -3'
miRNA:   3'- cuUAGCGCGUgCGCAaCGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 111246 0.66 0.95083
Target:  5'- -cGUCGC-UGCGCGUaUGCGCGggaaacucgauCGUCGg -3'
miRNA:   3'- cuUAGCGcGUGCGCA-ACGCGU-----------GCAGC- -5'
24676 5' -54.9 NC_005264.1 + 86503 0.66 0.95083
Target:  5'- cAGUCGC-CGCGCGgccaacuuuCGUGCGUCGa -3'
miRNA:   3'- cUUAGCGcGUGCGCaac------GCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 33495 0.66 0.95083
Target:  5'- ---cCGCGCuuGCucaGUGCGCGUCGc -3'
miRNA:   3'- cuuaGCGCGugCGcaaCGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 157395 0.66 0.942136
Target:  5'- ---cUGCGCAUGCuGUacgGCGCgGCGUUGg -3'
miRNA:   3'- cuuaGCGCGUGCG-CAa--CGCG-UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 85052 0.66 0.942136
Target:  5'- -cGUCuGCGC-CGCGgUGCGUcucugcggccGCGUCGu -3'
miRNA:   3'- cuUAG-CGCGuGCGCaACGCG----------UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 121172 0.66 0.942136
Target:  5'- cGGUC-CGCAC-UGaUGCGCACGUCc -3'
miRNA:   3'- cUUAGcGCGUGcGCaACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 154227 0.66 0.942136
Target:  5'- ----aGCGCcuaccgguGCGCGUUGCggaggaacacGCGCGUCu -3'
miRNA:   3'- cuuagCGCG--------UGCGCAACG----------CGUGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.