miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24709 5' -48 NC_005264.1 + 153395 0.66 0.99948
Target:  5'- gGGGAAAC--CGCUAAugGuGCAGGa- -3'
miRNA:   3'- -CUCUUUGuuGUGGUUugCuCGUCCau -5'
24709 5' -48 NC_005264.1 + 64183 0.66 0.99948
Target:  5'- -----cCAGCACUggGuCGAGCAGGa- -3'
miRNA:   3'- cucuuuGUUGUGGuuU-GCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 111746 0.66 0.99948
Target:  5'- cAGAccGCAGCACCGGcgaccGCGAaGCAGGc- -3'
miRNA:   3'- cUCUu-UGUUGUGGUU-----UGCU-CGUCCau -5'
24709 5' -48 NC_005264.1 + 109097 0.66 0.99948
Target:  5'- cGAG-GACGGCGCCGgaGACGGGCAc--- -3'
miRNA:   3'- -CUCuUUGUUGUGGU--UUGCUCGUccau -5'
24709 5' -48 NC_005264.1 + 159381 0.66 0.99935
Target:  5'- uGGAuGCGGCACCGGgcgccACGGGCGGcGg- -3'
miRNA:   3'- cUCUuUGUUGUGGUU-----UGCUCGUC-Cau -5'
24709 5' -48 NC_005264.1 + 60198 0.66 0.99935
Target:  5'- ----cACAAUACCAAGCGAGUGcGUAg -3'
miRNA:   3'- cucuuUGUUGUGGUUUGCUCGUcCAU- -5'
24709 5' -48 NC_005264.1 + 1449 0.66 0.999194
Target:  5'- cGGGAGcCAGCACCGGccaucGCcGGCGGGg- -3'
miRNA:   3'- -CUCUUuGUUGUGGUU-----UGcUCGUCCau -5'
24709 5' -48 NC_005264.1 + 120476 0.66 0.999194
Target:  5'- cGGGAGcCAGCACCGGccaucGCcGGCGGGg- -3'
miRNA:   3'- -CUCUUuGUUGUGGUU-----UGcUCGUCCau -5'
24709 5' -48 NC_005264.1 + 13345 0.66 0.999194
Target:  5'- aGGGAACGGCGCgAAuCGAGCGGc-- -3'
miRNA:   3'- cUCUUUGUUGUGgUUuGCUCGUCcau -5'
24709 5' -48 NC_005264.1 + 86139 0.66 0.999194
Target:  5'- cGAGuuGCGccgcgcuccGCGCCAAGCuGGGCagAGGUAu -3'
miRNA:   3'- -CUCuuUGU---------UGUGGUUUG-CUCG--UCCAU- -5'
24709 5' -48 NC_005264.1 + 95296 0.66 0.999194
Target:  5'- aGAGAGACGcCGCCAuACG-GCAGc-- -3'
miRNA:   3'- -CUCUUUGUuGUGGUuUGCuCGUCcau -5'
24709 5' -48 NC_005264.1 + 68462 0.66 0.999007
Target:  5'- cGAGGGACGACACCAcuuCGucGGUgAGGUu -3'
miRNA:   3'- -CUCUUUGUUGUGGUuu-GC--UCG-UCCAu -5'
24709 5' -48 NC_005264.1 + 19448 0.66 0.998987
Target:  5'- -cGAGGCGcucaucgGCACCAGuauauGCGcGCGGGUAg -3'
miRNA:   3'- cuCUUUGU-------UGUGGUU-----UGCuCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 5997 0.67 0.998784
Target:  5'- gGGGAGucguCGGC-CCcGACGGGCGGGg- -3'
miRNA:   3'- -CUCUUu---GUUGuGGuUUGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 95289 0.67 0.998784
Target:  5'- cAGuuACAACACgCAuGCGAGcCAGGa- -3'
miRNA:   3'- cUCuuUGUUGUG-GUuUGCUC-GUCCau -5'
24709 5' -48 NC_005264.1 + 125024 0.67 0.998784
Target:  5'- gGGGAGucguCGGC-CCcGACGGGCGGGg- -3'
miRNA:   3'- -CUCUUu---GUUGuGGuUUGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 36014 0.67 0.998208
Target:  5'- -cGAGGCGuugccCGCCAAuacucugaGCGAGCGGGa- -3'
miRNA:   3'- cuCUUUGUu----GUGGUU--------UGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 136533 0.67 0.998208
Target:  5'- cGGAGACGACG-CGGACGAagacGCGGGa- -3'
miRNA:   3'- cUCUUUGUUGUgGUUUGCU----CGUCCau -5'
24709 5' -48 NC_005264.1 + 92583 0.67 0.997842
Target:  5'- cAGGuuuuACGCCGAcGCGGGCAGGUu -3'
miRNA:   3'- cUCUuuguUGUGGUU-UGCUCGUCCAu -5'
24709 5' -48 NC_005264.1 + 151010 0.68 0.996923
Target:  5'- -cGAGACGAgACCcuuGAACGAGCuAGGc- -3'
miRNA:   3'- cuCUUUGUUgUGG---UUUGCUCG-UCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.