miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24709 5' -48 NC_005264.1 + 159381 0.66 0.99935
Target:  5'- uGGAuGCGGCACCGGgcgccACGGGCGGcGg- -3'
miRNA:   3'- cUCUuUGUUGUGGUU-----UGCUCGUC-Cau -5'
24709 5' -48 NC_005264.1 + 158154 0.68 0.996354
Target:  5'- uGGAcGCGGCGCCAcucgcccCGAcGCAGGUAu -3'
miRNA:   3'- cUCUuUGUUGUGGUuu-----GCU-CGUCCAU- -5'
24709 5' -48 NC_005264.1 + 155275 0.68 0.995702
Target:  5'- -cGGAGCcGCACguGGCGgaAGCGGGUAg -3'
miRNA:   3'- cuCUUUGuUGUGguUUGC--UCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 154522 0.7 0.980311
Target:  5'- gGGGAcgacGGCGACGCC--GCGGcGCAGGUGc -3'
miRNA:   3'- -CUCU----UUGUUGUGGuuUGCU-CGUCCAU- -5'
24709 5' -48 NC_005264.1 + 153395 0.66 0.99948
Target:  5'- gGGGAAAC--CGCUAAugGuGCAGGa- -3'
miRNA:   3'- -CUCUUUGuuGUGGUUugCuCGUCCau -5'
24709 5' -48 NC_005264.1 + 152674 0.69 0.992075
Target:  5'- cGAGGGcUGGgACCAAGCGggGGCGGGUAu -3'
miRNA:   3'- -CUCUUuGUUgUGGUUUGC--UCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 151010 0.68 0.996923
Target:  5'- -cGAGACGAgACCcuuGAACGAGCuAGGc- -3'
miRNA:   3'- cuCUUUGUUgUGG---UUUGCUCG-UCCau -5'
24709 5' -48 NC_005264.1 + 149798 0.7 0.982515
Target:  5'- --cAAACGACAgCAGACGAGCGGccGUAg -3'
miRNA:   3'- cucUUUGUUGUgGUUUGCUCGUC--CAU- -5'
24709 5' -48 NC_005264.1 + 145533 0.69 0.992075
Target:  5'- gGAGAAGCAGCgACCAuucaguuaGAUGGGCAGc-- -3'
miRNA:   3'- -CUCUUUGUUG-UGGU--------UUGCUCGUCcau -5'
24709 5' -48 NC_005264.1 + 136533 0.67 0.998208
Target:  5'- cGGAGACGACG-CGGACGAagacGCGGGa- -3'
miRNA:   3'- cUCUUUGUUGUgGUUUGCU----CGUCCau -5'
24709 5' -48 NC_005264.1 + 129222 1.08 0.017788
Target:  5'- aGAGAAACAACACCAAACGAGCAGGUAg -3'
miRNA:   3'- -CUCUUUGUUGUGGUUUGCUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 127632 0.68 0.994957
Target:  5'- aGAGAugAGCAacagucuccgGCGCUAGACGGGCuGGg- -3'
miRNA:   3'- -CUCU--UUGU----------UGUGGUUUGCUCGuCCau -5'
24709 5' -48 NC_005264.1 + 125024 0.67 0.998784
Target:  5'- gGGGAGucguCGGC-CCcGACGGGCGGGg- -3'
miRNA:   3'- -CUCUUu---GUUGuGGuUUGCUCGUCCau -5'
24709 5' -48 NC_005264.1 + 124291 0.68 0.995702
Target:  5'- cGGGAGGCGagucGCgGCCGGACG-GCGGGg- -3'
miRNA:   3'- -CUCUUUGU----UG-UGGUUUGCuCGUCCau -5'
24709 5' -48 NC_005264.1 + 120476 0.66 0.999194
Target:  5'- cGGGAGcCAGCACCGGccaucGCcGGCGGGg- -3'
miRNA:   3'- -CUCUUuGUUGUGGUU-----UGcUCGUCCau -5'
24709 5' -48 NC_005264.1 + 115905 0.7 0.980311
Target:  5'- --uGAGCAACGCCAaggaGACGAGCGGcGa- -3'
miRNA:   3'- cucUUUGUUGUGGU----UUGCUCGUC-Cau -5'
24709 5' -48 NC_005264.1 + 111746 0.66 0.99948
Target:  5'- cAGAccGCAGCACCGGcgaccGCGAaGCAGGc- -3'
miRNA:   3'- cUCUu-UGUUGUGGUU-----UGCU-CGUCCau -5'
24709 5' -48 NC_005264.1 + 111100 0.72 0.962568
Target:  5'- aGAGAugGGCuACACCcucgAGAUGGGCGGGUGc -3'
miRNA:   3'- -CUCU--UUGuUGUGG----UUUGCUCGUCCAU- -5'
24709 5' -48 NC_005264.1 + 109097 0.66 0.99948
Target:  5'- cGAG-GACGGCGCCGgaGACGGGCAc--- -3'
miRNA:   3'- -CUCuUUGUUGUGGU--UUGCUCGUccau -5'
24709 5' -48 NC_005264.1 + 106304 0.75 0.862
Target:  5'- gGAGAgcGACAGCugC-GGCGGGCAGGg- -3'
miRNA:   3'- -CUCU--UUGUUGugGuUUGCUCGUCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.