miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 3' -52.8 NC_005264.1 + 123036 0.66 0.980464
Target:  5'- gGAUGCgUGCCGCGca-UCGCcAACGAg -3'
miRNA:   3'- -CUAUG-GCGGCGCaacAGCGaUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 88591 0.66 0.979117
Target:  5'- -cUACCGCCGUGUcUGgagcgcggccagcgCGCUAcguGCGAg -3'
miRNA:   3'- cuAUGGCGGCGCA-ACa-------------GCGAU---UGCUa -5'
24724 3' -52.8 NC_005264.1 + 49801 0.66 0.978181
Target:  5'- --gAUCGCCGCGgcccaGUCGCggccGCGGa -3'
miRNA:   3'- cuaUGGCGGCGCaa---CAGCGau--UGCUa -5'
24724 3' -52.8 NC_005264.1 + 79298 0.66 0.975706
Target:  5'- --aAUCGCCGCGUgcggggucaUGUCGCUcGCc-- -3'
miRNA:   3'- cuaUGGCGGCGCA---------ACAGCGAuUGcua -5'
24724 3' -52.8 NC_005264.1 + 91026 0.66 0.975706
Target:  5'- cAUGCUGCCGCGUaUGU-GCgaacacgAGCGAg -3'
miRNA:   3'- cUAUGGCGGCGCA-ACAgCGa------UUGCUa -5'
24724 3' -52.8 NC_005264.1 + 106910 0.66 0.973033
Target:  5'- -cUACUGCCGCG-----GCUGACGAUa -3'
miRNA:   3'- cuAUGGCGGCGCaacagCGAUUGCUA- -5'
24724 3' -52.8 NC_005264.1 + 33966 0.66 0.973033
Target:  5'- cGGUGCCGCaa-GcUGUcCGCUGGCGAc -3'
miRNA:   3'- -CUAUGGCGgcgCaACA-GCGAUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 34760 0.67 0.963744
Target:  5'- ---gUCGCCGC--UGUCGCUAcACGAa -3'
miRNA:   3'- cuauGGCGGCGcaACAGCGAU-UGCUa -5'
24724 3' -52.8 NC_005264.1 + 7427 0.67 0.963744
Target:  5'- cGUG-CGCCGgGUgGUCGCUAuCGAUg -3'
miRNA:   3'- cUAUgGCGGCgCAaCAGCGAUuGCUA- -5'
24724 3' -52.8 NC_005264.1 + 159310 0.67 0.956432
Target:  5'- --cGCCGCCGCG---UCGCgguucGACGAg -3'
miRNA:   3'- cuaUGGCGGCGCaacAGCGa----UUGCUa -5'
24724 3' -52.8 NC_005264.1 + 40283 0.67 0.956432
Target:  5'- --cGCCGCCGCG---UCGCgguucGACGAg -3'
miRNA:   3'- cuaUGGCGGCGCaacAGCGa----UUGCUa -5'
24724 3' -52.8 NC_005264.1 + 83247 0.67 0.952424
Target:  5'- --gGCCGCCGCuGaUG-CGCUGGCGc- -3'
miRNA:   3'- cuaUGGCGGCG-CaACaGCGAUUGCua -5'
24724 3' -52.8 NC_005264.1 + 35011 0.67 0.948175
Target:  5'- --gGCCGCCGCGgaGgcaaCGCUGuCGGg -3'
miRNA:   3'- cuaUGGCGGCGCaaCa---GCGAUuGCUa -5'
24724 3' -52.8 NC_005264.1 + 23218 0.68 0.938944
Target:  5'- cGUGCCGCCGCGcgaGUUGUUGgauuacguguguGCGAa -3'
miRNA:   3'- cUAUGGCGGCGCaa-CAGCGAU------------UGCUa -5'
24724 3' -52.8 NC_005264.1 + 7953 0.68 0.938944
Target:  5'- --gGCCGCgGCGUcuuUGUCGCUGccuaGAg -3'
miRNA:   3'- cuaUGGCGgCGCA---ACAGCGAUug--CUa -5'
24724 3' -52.8 NC_005264.1 + 24890 0.68 0.928718
Target:  5'- --cGCgGCCGCGaaGUCGCgcAACGAUa -3'
miRNA:   3'- cuaUGgCGGCGCaaCAGCGa-UUGCUA- -5'
24724 3' -52.8 NC_005264.1 + 40743 0.69 0.911501
Target:  5'- --gGCCGCCGCca-GUCGC-GGCGAg -3'
miRNA:   3'- cuaUGGCGGCGcaaCAGCGaUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 61846 0.69 0.911501
Target:  5'- ----gCGCCGCGUacggGUUGUUGGCGAa -3'
miRNA:   3'- cuaugGCGGCGCAa---CAGCGAUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 159769 0.69 0.911501
Target:  5'- --gGCCGCCGCca-GUCGC-GGCGAg -3'
miRNA:   3'- cuaUGGCGGCGcaaCAGCGaUUGCUa -5'
24724 3' -52.8 NC_005264.1 + 55324 0.69 0.911501
Target:  5'- gGAUACuuuucaCGUgCGCGUUGUCGCUcGCGGc -3'
miRNA:   3'- -CUAUG------GCG-GCGCAACAGCGAuUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.