miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 98100 0.66 0.955897
Target:  5'- gGGCGAuccuu-GCGCGGGGcacGGCGCc -3'
miRNA:   3'- gCUGCUuauugcUGCGCCCC---UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 17276 0.66 0.955897
Target:  5'- -aACGGA-GGCGACGgGGcGGAGgGCu -3'
miRNA:   3'- gcUGCUUaUUGCUGCgCC-CCUCgCGu -5'
24724 5' -54.9 NC_005264.1 + 54250 0.66 0.955897
Target:  5'- aGGCugcuagAGCGcCGCaGGGAGCGCu -3'
miRNA:   3'- gCUGcuua--UUGCuGCGcCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 87580 0.66 0.951983
Target:  5'- cCGACGAGgacgaacACGGCGCGuGGucGCGUu -3'
miRNA:   3'- -GCUGCUUau-----UGCUGCGC-CCcuCGCGu -5'
24724 5' -54.9 NC_005264.1 + 132920 0.66 0.951983
Target:  5'- gCGGCGuaccucccUAGCGcCGaCGGGGuAGCGCc -3'
miRNA:   3'- -GCUGCuu------AUUGCuGC-GCCCC-UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 88238 0.66 0.951983
Target:  5'- aCGugGggUca-GGCGCGGGGucauCGUAg -3'
miRNA:   3'- -GCugCuuAuugCUGCGCCCCuc--GCGU- -5'
24724 5' -54.9 NC_005264.1 + 10962 0.66 0.951983
Target:  5'- cCGACG-AUGACGAaGCaGGGGGCu-- -3'
miRNA:   3'- -GCUGCuUAUUGCUgCGcCCCUCGcgu -5'
24724 5' -54.9 NC_005264.1 + 51404 0.66 0.943472
Target:  5'- -cACGAaguacAUGGCGuACGcCGGGGAGcCGCc -3'
miRNA:   3'- gcUGCU-----UAUUGC-UGC-GCCCCUC-GCGu -5'
24724 5' -54.9 NC_005264.1 + 113368 0.66 0.943472
Target:  5'- cCGuCGAAU-ACGGCGCGGGucaGGGUuauGCAg -3'
miRNA:   3'- -GCuGCUUAuUGCUGCGCCC---CUCG---CGU- -5'
24724 5' -54.9 NC_005264.1 + 47937 0.67 0.938869
Target:  5'- uCGACGGAgAACGGCuCGGcacGAGCGUg -3'
miRNA:   3'- -GCUGCUUaUUGCUGcGCCc--CUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 28042 0.67 0.934033
Target:  5'- cCGGCGcgc-GCGACGCcGGGuaaaAGCGCGc -3'
miRNA:   3'- -GCUGCuuauUGCUGCGcCCC----UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 48792 0.67 0.934033
Target:  5'- cCGGCGGGgcgAACGAccuCGCGuuucccacaGcGGAGCGCAu -3'
miRNA:   3'- -GCUGCUUa--UUGCU---GCGC---------C-CCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 133772 0.67 0.934033
Target:  5'- cCGACGAAgagcggcaGAUGACGauGGGGGC-CAa -3'
miRNA:   3'- -GCUGCUUa-------UUGCUGCgcCCCUCGcGU- -5'
24724 5' -54.9 NC_005264.1 + 95446 0.67 0.934033
Target:  5'- uCGugGAAUAcgcuACcGCGCcGGcGGGCGCAg -3'
miRNA:   3'- -GCugCUUAU----UGcUGCGcCC-CUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 150527 0.67 0.928962
Target:  5'- aCGAgGAAggucaGGCGGCuccaggcucggGCGGGGAGgGCc -3'
miRNA:   3'- -GCUgCUUa----UUGCUG-----------CGCCCCUCgCGu -5'
24724 5' -54.9 NC_005264.1 + 154792 0.67 0.928962
Target:  5'- gCGACGuggGUGAaGAgGCGGaGGGCGCGg -3'
miRNA:   3'- -GCUGCu--UAUUgCUgCGCCcCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 20243 0.67 0.928962
Target:  5'- uGACGggUGggcagggguuGCGGCGCggccucgcggaGGGGAccgucuGCGCGc -3'
miRNA:   3'- gCUGCuuAU----------UGCUGCG-----------CCCCU------CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 42380 0.67 0.928962
Target:  5'- gCGAucuuCGAGgcGACGugGCGGuGGAaauGCGCGa -3'
miRNA:   3'- -GCU----GCUUa-UUGCugCGCC-CCU---CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 31500 0.67 0.928962
Target:  5'- aCGAgGAAggucaGGCGGCuccaggcucggGCGGGGAGgGCc -3'
miRNA:   3'- -GCUgCUUa----UUGCUG-----------CGCCCCUCgCGu -5'
24724 5' -54.9 NC_005264.1 + 35766 0.67 0.928962
Target:  5'- gCGACGuggGUGAaGAgGCGGaGGGCGCGg -3'
miRNA:   3'- -GCUGCu--UAUUgCUgCGCCcCUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.