miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 162706 0.7 0.817289
Target:  5'- cCGGCGuuaaGGCGGcCGcCGGGGAGCGgGa -3'
miRNA:   3'- -GCUGCuua-UUGCU-GC-GCCCCUCGCgU- -5'
24724 5' -54.9 NC_005264.1 + 162173 0.69 0.857953
Target:  5'- aGcACGggUGgaGCGGggaGgGGGGGGCGCGu -3'
miRNA:   3'- gC-UGCuuAU--UGCUg--CgCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 161305 0.71 0.781733
Target:  5'- cCGGCGcGGUcAACGcCGCGGGGccccaaaaaacGGCGCAg -3'
miRNA:   3'- -GCUGC-UUA-UUGCuGCGCCCC-----------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 160080 0.73 0.654532
Target:  5'- aGACGGu--ACGGCGCcgGGGGAcGCGCc -3'
miRNA:   3'- gCUGCUuauUGCUGCG--CCCCU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 159808 0.73 0.664664
Target:  5'- aGACGc--AGCGGCgcugcaaacuGCGGGGGGCGCu -3'
miRNA:   3'- gCUGCuuaUUGCUG----------CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 158970 0.69 0.872133
Target:  5'- aGACGGA----GACGUGGGGcagcccaauccccGGCGCAg -3'
miRNA:   3'- gCUGCUUauugCUGCGCCCC-------------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 158414 0.7 0.81643
Target:  5'- aGACG-AUGACGACGUcggcgaaGGGGGcacuGCGCu -3'
miRNA:   3'- gCUGCuUAUUGCUGCG-------CCCCU----CGCGu -5'
24724 5' -54.9 NC_005264.1 + 157692 0.71 0.781733
Target:  5'- gGACGAu--GCGGCGCGGcc-GCGCAu -3'
miRNA:   3'- gCUGCUuauUGCUGCGCCccuCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 156185 0.7 0.825783
Target:  5'- gCGGCG--UGGCGGCGcCGGcuauaugucGGGGCGCAg -3'
miRNA:   3'- -GCUGCuuAUUGCUGC-GCC---------CCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 155247 0.69 0.847039
Target:  5'- gGAUGAGgaagcaucuccgcAGCGGCGCGGGGuaGGCgGCGg -3'
miRNA:   3'- gCUGCUUa------------UUGCUGCGCCCC--UCG-CGU- -5'
24724 5' -54.9 NC_005264.1 + 154906 0.69 0.857953
Target:  5'- gCGGCcgugGACGACGCGuGGAcGCGCGc -3'
miRNA:   3'- -GCUGcuuaUUGCUGCGCcCCU-CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 154792 0.67 0.928962
Target:  5'- gCGACGuggGUGAaGAgGCGGaGGGCGCGg -3'
miRNA:   3'- -GCUGCu--UAUUgCUgCGCCcCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 153272 0.68 0.879994
Target:  5'- aGACGAacccggcuucuGUAGCGagGCGCGGGcGAcGCGUc -3'
miRNA:   3'- gCUGCU-----------UAUUGC--UGCGCCC-CU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 151859 0.71 0.781733
Target:  5'- cCGGCGGc-GAC-ACGUGGGGGGCGUc -3'
miRNA:   3'- -GCUGCUuaUUGcUGCGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 151106 0.67 0.928962
Target:  5'- -uGCGAAag-UGACGUaGGGGGGCGCc -3'
miRNA:   3'- gcUGCUUauuGCUGCG-CCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 150986 0.71 0.753648
Target:  5'- -cGCGAGUGGCGGCGaCGGGccGCGUg -3'
miRNA:   3'- gcUGCUUAUUGCUGC-GCCCcuCGCGu -5'
24724 5' -54.9 NC_005264.1 + 150527 0.67 0.928962
Target:  5'- aCGAgGAAggucaGGCGGCuccaggcucggGCGGGGAGgGCc -3'
miRNA:   3'- -GCUgCUUa----UUGCUG-----------CGCCCCUCgCGu -5'
24724 5' -54.9 NC_005264.1 + 145863 0.72 0.704849
Target:  5'- cCGGCGGAguuuGCGaACGgGGGuGGGUGCAa -3'
miRNA:   3'- -GCUGCUUau--UGC-UGCgCCC-CUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 143873 0.69 0.857953
Target:  5'- aGACucuAUAAguCGGCGCGGcGGGCGCAa -3'
miRNA:   3'- gCUGcu-UAUU--GCUGCGCCcCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 143602 0.67 0.912334
Target:  5'- -aACGAG-AAUGGCGCGGGGuacAGCGa- -3'
miRNA:   3'- gcUGCUUaUUGCUGCGCCCC---UCGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.