miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24724 5' -54.9 NC_005264.1 + 100083 0.68 0.886913
Target:  5'- gGGCGuagcAUGGCGGcCGCGGGGcucAGCGaCGa -3'
miRNA:   3'- gCUGCu---UAUUGCU-GCGCCCC---UCGC-GU- -5'
24724 5' -54.9 NC_005264.1 + 120742 0.67 0.923111
Target:  5'- cCGGCGAcu-GCGACGaCaGGGAuaucccgGCGCAg -3'
miRNA:   3'- -GCUGCUuauUGCUGC-GcCCCU-------CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 66690 0.67 0.918112
Target:  5'- cCGGCGc----CGG-GCGGGGGGCGUAc -3'
miRNA:   3'- -GCUGCuuauuGCUgCGCCCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 100842 0.67 0.912334
Target:  5'- aCGGCGAGUucucccuCGACGCauGGGAccagGCGCGc -3'
miRNA:   3'- -GCUGCUUAuu-----GCUGCGc-CCCU----CGCGU- -5'
24724 5' -54.9 NC_005264.1 + 115246 0.68 0.906323
Target:  5'- gGGCGuGUcaAAUGGCcuGCGGGGAGUGUc -3'
miRNA:   3'- gCUGCuUA--UUGCUG--CGCCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 45641 0.68 0.906323
Target:  5'- aGAUaacUGACGACGCGGcGGcuaggcgccaAGCGCAg -3'
miRNA:   3'- gCUGcuuAUUGCUGCGCC-CC----------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 47563 0.68 0.904475
Target:  5'- uGACGAaggccucgugccagAUAugGcuCGCGGGGAcGCGUu -3'
miRNA:   3'- gCUGCU--------------UAUugCu-GCGCCCCU-CGCGu -5'
24724 5' -54.9 NC_005264.1 + 81656 0.68 0.900081
Target:  5'- uGAgGAGUuacgGACGGCgGCGGGGAGUc-- -3'
miRNA:   3'- gCUgCUUA----UUGCUG-CGCCCCUCGcgu -5'
24724 5' -54.9 NC_005264.1 + 45150 0.68 0.89361
Target:  5'- aGGCGcc--ACGACGCGGaGGcaggagAGCGCGg -3'
miRNA:   3'- gCUGCuuauUGCUGCGCC-CC------UCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 100612 0.67 0.923655
Target:  5'- cCGACGAccccgaAGCGGC-CGcGGAGCGCGc -3'
miRNA:   3'- -GCUGCUua----UUGCUGcGCcCCUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 31500 0.67 0.928962
Target:  5'- aCGAgGAAggucaGGCGGCuccaggcucggGCGGGGAGgGCc -3'
miRNA:   3'- -GCUgCUUa----UUGCUG-----------CGCCCCUCgCGu -5'
24724 5' -54.9 NC_005264.1 + 32079 0.67 0.928962
Target:  5'- -uGCGAAag-UGACGUaGGGGGGCGCc -3'
miRNA:   3'- gcUGCUUauuGCUGCG-CCCCUCGCGu -5'
24724 5' -54.9 NC_005264.1 + 132920 0.66 0.951983
Target:  5'- gCGGCGuaccucccUAGCGcCGaCGGGGuAGCGCc -3'
miRNA:   3'- -GCUGCuu------AUUGCuGC-GCCCC-UCGCGu -5'
24724 5' -54.9 NC_005264.1 + 88238 0.66 0.951983
Target:  5'- aCGugGggUca-GGCGCGGGGucauCGUAg -3'
miRNA:   3'- -GCugCuuAuugCUGCGCCCCuc--GCGU- -5'
24724 5' -54.9 NC_005264.1 + 87580 0.66 0.951983
Target:  5'- cCGACGAGgacgaacACGGCGCGuGGucGCGUu -3'
miRNA:   3'- -GCUGCUUau-----UGCUGCGC-CCcuCGCGu -5'
24724 5' -54.9 NC_005264.1 + 10962 0.66 0.951983
Target:  5'- cCGACG-AUGACGAaGCaGGGGGCu-- -3'
miRNA:   3'- -GCUGCuUAUUGCUgCGcCCCUCGcgu -5'
24724 5' -54.9 NC_005264.1 + 113368 0.66 0.943472
Target:  5'- cCGuCGAAU-ACGGCGCGGGucaGGGUuauGCAg -3'
miRNA:   3'- -GCuGCUUAuUGCUGCGCCC---CUCG---CGU- -5'
24724 5' -54.9 NC_005264.1 + 133772 0.67 0.934033
Target:  5'- cCGACGAAgagcggcaGAUGACGauGGGGGC-CAa -3'
miRNA:   3'- -GCUGCUUa-------UUGCUGCgcCCCUCGcGU- -5'
24724 5' -54.9 NC_005264.1 + 95446 0.67 0.934033
Target:  5'- uCGugGAAUAcgcuACcGCGCcGGcGGGCGCAg -3'
miRNA:   3'- -GCugCUUAU----UGcUGCGcCC-CUCGCGU- -5'
24724 5' -54.9 NC_005264.1 + 35766 0.67 0.928962
Target:  5'- gCGACGuggGUGAaGAgGCGGaGGGCGCGg -3'
miRNA:   3'- -GCUGCu--UAUUgCUgCGCCcCUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.