miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24725 5' -54.6 NC_005264.1 + 162405 0.66 0.949947
Target:  5'- uAGGUacgAGACGCuagggCAGAG-GGGCGCg -3'
miRNA:   3'- cUUCG---UCUGCGcga--GUUUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 158518 0.69 0.82677
Target:  5'- aGggGCAGGCcuGCGCUgu-GGUGGaCGCc -3'
miRNA:   3'- -CuuCGUCUG--CGCGAguuUCACCcGCG- -5'
24725 5' -54.6 NC_005264.1 + 155200 0.66 0.936194
Target:  5'- -cGGCAGGCgGCGUUUcguGGuUGGGCGa -3'
miRNA:   3'- cuUCGUCUG-CGCGAGuu-UC-ACCCGCg -5'
24725 5' -54.6 NC_005264.1 + 154969 0.76 0.470416
Target:  5'- --cGCAGAUGCGCagCGAAcGUGGGgGCc -3'
miRNA:   3'- cuuCGUCUGCGCGa-GUUU-CACCCgCG- -5'
24725 5' -54.6 NC_005264.1 + 154814 0.73 0.620946
Target:  5'- gGgcGCGGugGCGCcgUCGuGGcGGGCGCc -3'
miRNA:   3'- -CuuCGUCugCGCG--AGUuUCaCCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 154032 0.68 0.867133
Target:  5'- --cGCGaGCgGCGCUCGAAGaGGaGCGCu -3'
miRNA:   3'- cuuCGUcUG-CGCGAGUUUCaCC-CGCG- -5'
24725 5' -54.6 NC_005264.1 + 153293 0.67 0.902101
Target:  5'- cGAGGCGcgggcGACGCGUcgaagaguaaguUCGAGGgccccucgaGGGCGCc -3'
miRNA:   3'- -CUUCGU-----CUGCGCG------------AGUUUCa--------CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 150596 0.69 0.851593
Target:  5'- cGAcGUGGAgGCGC-CAGAGgugGGGCGa -3'
miRNA:   3'- -CUuCGUCUgCGCGaGUUUCa--CCCGCg -5'
24725 5' -54.6 NC_005264.1 + 146577 0.67 0.908392
Target:  5'- uGAAGaucgauGACaGUGUUgCGGGGUGGGCGUa -3'
miRNA:   3'- -CUUCgu----CUG-CGCGA-GUUUCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 146524 0.68 0.859468
Target:  5'- aGAGCu-ACGCGUcgAGAGUGcGGCGCa -3'
miRNA:   3'- cUUCGucUGCGCGagUUUCAC-CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 145864 0.67 0.920247
Target:  5'- -cGGCGGAguuUGCGaacgGGGGUGGGUGCa -3'
miRNA:   3'- cuUCGUCU---GCGCgag-UUUCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 143208 0.72 0.693217
Target:  5'- -cAGCAGGCagccagaaaGCGUUCAGAGgggagGGGCGa -3'
miRNA:   3'- cuUCGUCUG---------CGCGAGUUUCa----CCCGCg -5'
24725 5' -54.6 NC_005264.1 + 143202 0.66 0.94737
Target:  5'- aGAAGuCAcGACcaCGCUCAGAGggaauuguuggcgaGGGCGCc -3'
miRNA:   3'- -CUUC-GU-CUGc-GCGAGUUUCa-------------CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 136877 1.13 0.002141
Target:  5'- cGAAGCAGACGCGCUCAAAGUGGGCGCg -3'
miRNA:   3'- -CUUCGUCUGCGCGAGUUUCACCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 136650 0.69 0.818122
Target:  5'- cGGAGCcucGACGCGCgUGGAGUaaaacaauGGGUGCa -3'
miRNA:   3'- -CUUCGu--CUGCGCGaGUUUCA--------CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 136458 0.73 0.641677
Target:  5'- uGAGGC---CGCGCUCAGAGacGGCGCc -3'
miRNA:   3'- -CUUCGucuGCGCGAGUUUCacCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 134995 0.66 0.936194
Target:  5'- uGGGCGGAUGcCGCcgCGAcAGU-GGCGCg -3'
miRNA:   3'- cUUCGUCUGC-GCGa-GUU-UCAcCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 133869 0.73 0.610589
Target:  5'- -cAGCGGcucCGCGCUCAGAGUcuuGGCGUu -3'
miRNA:   3'- cuUCGUCu--GCGCGAGUUUCAc--CCGCG- -5'
24725 5' -54.6 NC_005264.1 + 132341 0.69 0.809302
Target:  5'- gGAGGaCGGcCGCGCggagcaGGAGgagagGGGCGCg -3'
miRNA:   3'- -CUUC-GUCuGCGCGag----UUUCa----CCCGCG- -5'
24725 5' -54.6 NC_005264.1 + 131604 0.74 0.549054
Target:  5'- gGGAGCGG-CGCGC-----GUGGGCGCg -3'
miRNA:   3'- -CUUCGUCuGCGCGaguuuCACCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.