miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24728 3' -50.3 NC_005264.1 + 33792 0.66 0.996711
Target:  5'- uAGCcuGGG-UUCCGAa-CGGCGCGGg -3'
miRNA:   3'- -UUGuuCUCaAAGGCUaaGCCGCGUCg -5'
24728 3' -50.3 NC_005264.1 + 152818 0.66 0.996711
Target:  5'- uAGCcuGGG-UUCCGAa-CGGCGCGGg -3'
miRNA:   3'- -UUGuuCUCaAAGGCUaaGCCGCGUCg -5'
24728 3' -50.3 NC_005264.1 + 133425 0.66 0.996711
Target:  5'- uGACAuGAccuccUCCGAUgCGGCGguGCc -3'
miRNA:   3'- -UUGUuCUcaa--AGGCUAaGCCGCguCG- -5'
24728 3' -50.3 NC_005264.1 + 156424 0.66 0.996656
Target:  5'- cGCGAGAGUguaCGuggaggaGUUCGGCauggccguggaGCAGCa -3'
miRNA:   3'- uUGUUCUCAaagGC-------UAAGCCG-----------CGUCG- -5'
24728 3' -50.3 NC_005264.1 + 37397 0.66 0.996656
Target:  5'- cGCGAGAGUguaCGuggaggaGUUCGGCauggccguggaGCAGCa -3'
miRNA:   3'- uUGUUCUCAaagGC-------UAAGCCG-----------CGUCG- -5'
24728 3' -50.3 NC_005264.1 + 55123 0.66 0.996601
Target:  5'- cACGAGGGUUcgacaccccgCCGugcgcugugcUGGCGCAGCg -3'
miRNA:   3'- uUGUUCUCAAa---------GGCuaa-------GCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 30222 0.66 0.996126
Target:  5'- uAACAuaGGUUUCCGcggcCaGCGCGGCa -3'
miRNA:   3'- -UUGUucUCAAAGGCuaa-GcCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 51583 0.66 0.996126
Target:  5'- cGACGAucGAGUUUCCcg--CGcauacGCGCAGCg -3'
miRNA:   3'- -UUGUU--CUCAAAGGcuaaGC-----CGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 133027 0.66 0.996126
Target:  5'- aGACAGGAagacccUUUCCG---CGGCGguGCg -3'
miRNA:   3'- -UUGUUCUc-----AAAGGCuaaGCCGCguCG- -5'
24728 3' -50.3 NC_005264.1 + 110022 0.66 0.996126
Target:  5'- -cCGAGuGUccaaUUCaCGAgauugcagCGGCGCGGCa -3'
miRNA:   3'- uuGUUCuCA----AAG-GCUaa------GCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 157350 0.66 0.99587
Target:  5'- cGACGAGGGUUggcgggcccuggCCGugaugcugggCGGCGgGGCg -3'
miRNA:   3'- -UUGUUCUCAAa-----------GGCuaa-------GCCGCgUCG- -5'
24728 3' -50.3 NC_005264.1 + 38323 0.66 0.99587
Target:  5'- cGACGAGGGUUggcgggcccuggCCGugaugcugggCGGCGgGGCg -3'
miRNA:   3'- -UUGUUCUCAAa-----------GGCuaa-------GCCGCgUCG- -5'
24728 3' -50.3 NC_005264.1 + 81535 0.66 0.9947
Target:  5'- cACGAucGGUUUCCGuaaccaaagCgGGCGCAGCa -3'
miRNA:   3'- uUGUUc-UCAAAGGCuaa------G-CCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 155792 0.66 0.993841
Target:  5'- ---uAGGGauaggUCCGAauucgUGGCGCAGCa -3'
miRNA:   3'- uuguUCUCaa---AGGCUaa---GCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 31458 0.66 0.993841
Target:  5'- cGACGAGAGcgucgCCGAUg-GGCGUGGa -3'
miRNA:   3'- -UUGUUCUCaaa--GGCUAagCCGCGUCg -5'
24728 3' -50.3 NC_005264.1 + 98798 0.66 0.993841
Target:  5'- cGCGAGA---UCgGGUaUCGGCGguGCu -3'
miRNA:   3'- uUGUUCUcaaAGgCUA-AGCCGCguCG- -5'
24728 3' -50.3 NC_005264.1 + 150485 0.66 0.993841
Target:  5'- cGACGAGAGcgucgCCGAUg-GGCGUGGa -3'
miRNA:   3'- -UUGUUCUCaaa--GGCUAagCCGCGUCg -5'
24728 3' -50.3 NC_005264.1 + 103691 0.66 0.993563
Target:  5'- gGGCGAGGGggaagUUGAgggccaguggagcggCGGCGCGGCa -3'
miRNA:   3'- -UUGUUCUCaaa--GGCUaa-------------GCCGCGUCG- -5'
24728 3' -50.3 NC_005264.1 + 136340 0.66 0.992875
Target:  5'- cGGCGuAGAag--CUGGUUCGGCGCcGCa -3'
miRNA:   3'- -UUGU-UCUcaaaGGCUAAGCCGCGuCG- -5'
24728 3' -50.3 NC_005264.1 + 119756 0.67 0.99058
Target:  5'- cGGCAAGGcGgcUCUGG-UCGGCGUAGa -3'
miRNA:   3'- -UUGUUCU-CaaAGGCUaAGCCGCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.