miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 5' -55.3 NC_005264.1 + 159562 0.66 0.935219
Target:  5'- cCCGUCGcccagggacguggcgCUGCGGCUCCuggAGCGacaGCa -3'
miRNA:   3'- aGGCAGCa--------------GAUGCCGAGG---UUGCac-CG- -5'
24729 5' -55.3 NC_005264.1 + 158571 0.66 0.95634
Target:  5'- gCCGcCGcCccGCGGUUCCcGCGcGGCa -3'
miRNA:   3'- aGGCaGCaGa-UGCCGAGGuUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 157919 0.67 0.921212
Target:  5'- -gCGa-GUCUaaaucuaaguuagggACGGCggCCAGCGUGGCc -3'
miRNA:   3'- agGCagCAGA---------------UGCCGa-GGUUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 154773 0.69 0.859484
Target:  5'- cCCGUgccCGaCUGCGGC-CgCGACGUGGg -3'
miRNA:   3'- aGGCA---GCaGAUGCCGaG-GUUGCACCg -5'
24729 5' -55.3 NC_005264.1 + 149873 0.68 0.866962
Target:  5'- gUCGUCGUCggcgGCGGCgcgCCGccCGguaGGCa -3'
miRNA:   3'- aGGCAGCAGa---UGCCGa--GGUu-GCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 141610 0.66 0.95634
Target:  5'- gCCGUCGUCaacGCGGaaagCCGuCGcGGCc -3'
miRNA:   3'- aGGCAGCAGa--UGCCga--GGUuGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 139602 1.11 0.003068
Target:  5'- cUCCGUCGUCUACGGCUCCAACGUGGCc -3'
miRNA:   3'- -AGGCAGCAGAUGCCGAGGUUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 138515 0.66 0.934731
Target:  5'- gCCGUUcaCUGCGGCcccUUCAACGcucGGCa -3'
miRNA:   3'- aGGCAGcaGAUGCCG---AGGUUGCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 137284 0.66 0.952471
Target:  5'- uUCCGcggCGUUgGCGGCgacgCgGGCGUacGGCa -3'
miRNA:   3'- -AGGCa--GCAGaUGCCGa---GgUUGCA--CCG- -5'
24729 5' -55.3 NC_005264.1 + 132766 0.67 0.918993
Target:  5'- gUCCGggCG-CgGCGGCgCCGACGaggGGCu -3'
miRNA:   3'- -AGGCa-GCaGaUGCCGaGGUUGCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 132566 0.76 0.483574
Target:  5'- gUUCGUCGUC-GCGGCcgcgcuacacuucggUgCAGCGUGGCa -3'
miRNA:   3'- -AGGCAGCAGaUGCCG---------------AgGUUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 131488 0.7 0.793006
Target:  5'- cCCGgcaggCGUCaGCGaGUUCUuGCGUGGCc -3'
miRNA:   3'- aGGCa----GCAGaUGC-CGAGGuUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 126542 0.73 0.617242
Target:  5'- gCC-UCGUCUACgGGCUCUucgcgccgcgaaGACGUGGUc -3'
miRNA:   3'- aGGcAGCAGAUG-CCGAGG------------UUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 126002 0.75 0.508246
Target:  5'- cUUCGUCGUCgcuguCGGuCUCCuccucGGCGUGGCc -3'
miRNA:   3'- -AGGCAGCAGau---GCC-GAGG-----UUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 125659 0.78 0.366961
Target:  5'- gCCGUaaaaugCGUCUGCGGC-CCAGCGUGcuGCa -3'
miRNA:   3'- aGGCA------GCAGAUGCCGaGGUUGCAC--CG- -5'
24729 5' -55.3 NC_005264.1 + 121884 0.72 0.697762
Target:  5'- gCCGUCGcccgCUGCGGCUgCGAuCGaccggGGCg -3'
miRNA:   3'- aGGCAGCa---GAUGCCGAgGUU-GCa----CCG- -5'
24729 5' -55.3 NC_005264.1 + 121676 0.67 0.915593
Target:  5'- cUCCGucUCGUCUACagaguccucuGGCcCCGACcgcgagggcagcgugGUGGCg -3'
miRNA:   3'- -AGGC--AGCAGAUG----------CCGaGGUUG---------------CACCG- -5'
24729 5' -55.3 NC_005264.1 + 114918 0.69 0.835872
Target:  5'- cUCCGUCGauaa-GGCUCCG-CG-GGCa -3'
miRNA:   3'- -AGGCAGCagaugCCGAGGUuGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 102855 0.69 0.843933
Target:  5'- gCCGUC-UCgcucGCGGCcaCCGccGCGUGGCu -3'
miRNA:   3'- aGGCAGcAGa---UGCCGa-GGU--UGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 97460 0.66 0.95634
Target:  5'- cUCCGUCGcCUGCGaGaCUCUAccCGgcGGCg -3'
miRNA:   3'- -AGGCAGCaGAUGC-C-GAGGUu-GCa-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.