miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 3' -53.6 NC_005264.1 + 124178 0.66 0.977485
Target:  5'- -aUGGGCGCcGCcGCGGCCaUCAUCuCGa -3'
miRNA:   3'- ggACUUGUGcCGaUGUCGG-AGUAG-GC- -5'
24732 3' -53.6 NC_005264.1 + 138839 0.66 0.977485
Target:  5'- aCCaUGGACGCGGggAUcuauGCCUUcuauGUCCGg -3'
miRNA:   3'- -GG-ACUUGUGCCgaUGu---CGGAG----UAGGC- -5'
24732 3' -53.6 NC_005264.1 + 3004 0.66 0.977485
Target:  5'- aCUGGGCcgGCGGCU-CGGCuCUgggGUCCGa -3'
miRNA:   3'- gGACUUG--UGCCGAuGUCG-GAg--UAGGC- -5'
24732 3' -53.6 NC_005264.1 + 25785 0.66 0.974999
Target:  5'- gCCUGGAucugcuCACGGCgguCAGCUUUggCCu -3'
miRNA:   3'- -GGACUU------GUGCCGau-GUCGGAGuaGGc -5'
24732 3' -53.6 NC_005264.1 + 92428 0.66 0.974999
Target:  5'- aCCUGAACgaGCcGC-ACGGUCUCGUCa- -3'
miRNA:   3'- -GGACUUG--UGcCGaUGUCGGAGUAGgc -5'
24732 3' -53.6 NC_005264.1 + 103060 0.66 0.974999
Target:  5'- --cGGACACGGCcguggACAGCCaCggCCa -3'
miRNA:   3'- ggaCUUGUGCCGa----UGUCGGaGuaGGc -5'
24732 3' -53.6 NC_005264.1 + 70021 0.66 0.972318
Target:  5'- uCCUucuuCuuGGCUucacugGCGGCCUCGUCCu -3'
miRNA:   3'- -GGAcuu-GugCCGA------UGUCGGAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 43339 0.66 0.972318
Target:  5'- gCCUcgGAGCACGcccuGC-GCAGCCaCAUCCa -3'
miRNA:   3'- -GGA--CUUGUGC----CGaUGUCGGaGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 110331 0.66 0.972318
Target:  5'- gCCUGuuCgACGGCgUGCAGCCUUcaguagaccaGUUCGa -3'
miRNA:   3'- -GGACuuG-UGCCG-AUGUCGGAG----------UAGGC- -5'
24732 3' -53.6 NC_005264.1 + 68498 0.66 0.972318
Target:  5'- --cGAACGCGGCgACGGCUU--UCUGg -3'
miRNA:   3'- ggaCUUGUGCCGaUGUCGGAguAGGC- -5'
24732 3' -53.6 NC_005264.1 + 812 0.66 0.972318
Target:  5'- gCUGGguGCGCGGCcgGCuuuAGCCUCugucUCUGg -3'
miRNA:   3'- gGACU--UGUGCCGa-UG---UCGGAGu---AGGC- -5'
24732 3' -53.6 NC_005264.1 + 144824 0.66 0.972318
Target:  5'- aCCUGAcCGCGGCcgacccGCcGCCgUCAgagCCGg -3'
miRNA:   3'- -GGACUuGUGCCGa-----UGuCGG-AGUa--GGC- -5'
24732 3' -53.6 NC_005264.1 + 46280 0.66 0.969436
Target:  5'- gCUGAGCGCc---GCAGCucgCUCAUCCGg -3'
miRNA:   3'- gGACUUGUGccgaUGUCG---GAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 40736 0.66 0.969436
Target:  5'- --cGAACGCGGCagaguucACGGCCUCggcaaauguuauGUCCc -3'
miRNA:   3'- ggaCUUGUGCCGa------UGUCGGAG------------UAGGc -5'
24732 3' -53.6 NC_005264.1 + 57132 0.66 0.969436
Target:  5'- aCCUGGGCGCGGacgUAGgCUgGUCUGu -3'
miRNA:   3'- -GGACUUGUGCCgauGUCgGAgUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 99890 0.66 0.969137
Target:  5'- gUCUGAccccgaacaaaagGCGCGGCuUGCGGCCgcgCAagcCCGc -3'
miRNA:   3'- -GGACU-------------UGUGCCG-AUGUCGGa--GUa--GGC- -5'
24732 3' -53.6 NC_005264.1 + 27674 0.66 0.966347
Target:  5'- aCCgagGuACGCGGCUGgccuCuGCCUCG-CCGa -3'
miRNA:   3'- -GGa--CuUGUGCCGAU----GuCGGAGUaGGC- -5'
24732 3' -53.6 NC_005264.1 + 77282 0.66 0.963043
Target:  5'- gCCUGGaacgaauuggguGCGCGGCagaUAguGUCUCGUUCa -3'
miRNA:   3'- -GGACU------------UGUGCCG---AUguCGGAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 132100 0.66 0.963043
Target:  5'- cCCUGAgcggcucuuuGCGCGGgaAgAGCCUCcugaugCCGc -3'
miRNA:   3'- -GGACU----------UGUGCCgaUgUCGGAGua----GGC- -5'
24732 3' -53.6 NC_005264.1 + 29381 0.66 0.963043
Target:  5'- -aUGAGCugGaGCUugAGCCguaagCGUgCGg -3'
miRNA:   3'- ggACUUGugC-CGAugUCGGa----GUAgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.