miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 3' -53.6 NC_005264.1 + 154583 0.67 0.950557
Target:  5'- uCCUGAACcaacacgccaGCGaagaggggggagcuGCUGCGGCUUCggCCGa -3'
miRNA:   3'- -GGACUUG----------UGC--------------CGAUGUCGGAGuaGGC- -5'
24732 3' -53.6 NC_005264.1 + 153091 0.68 0.938456
Target:  5'- --gGAGCACGGCgGCuuGCCUgCcgCCGa -3'
miRNA:   3'- ggaCUUGUGCCGaUGu-CGGA-GuaGGC- -5'
24732 3' -53.6 NC_005264.1 + 152168 0.67 0.94314
Target:  5'- aCUUGAACACGG-UACAGU--UAUCCa -3'
miRNA:   3'- -GGACUUGUGCCgAUGUCGgaGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 144824 0.66 0.972318
Target:  5'- aCCUGAcCGCGGCcgacccGCcGCCgUCAgagCCGg -3'
miRNA:   3'- -GGACUuGUGCCGa-----UGuCGG-AGUa--GGC- -5'
24732 3' -53.6 NC_005264.1 + 144222 0.68 0.933531
Target:  5'- aCUGcacaAACACGuccGCUGCGGUCUUcUCCGg -3'
miRNA:   3'- gGAC----UUGUGC---CGAUGUCGGAGuAGGC- -5'
24732 3' -53.6 NC_005264.1 + 143499 0.67 0.95952
Target:  5'- uCCUGGA-AUGGCUacGCGGCgUCcuUCCGg -3'
miRNA:   3'- -GGACUUgUGCCGA--UGUCGgAGu-AGGC- -5'
24732 3' -53.6 NC_005264.1 + 141480 1.12 0.003757
Target:  5'- uCCUGAACACGGCUACAGCCUCAUCCGg -3'
miRNA:   3'- -GGACUUGUGCCGAUGUCGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 138839 0.66 0.977485
Target:  5'- aCCaUGGACGCGGggAUcuauGCCUUcuauGUCCGg -3'
miRNA:   3'- -GG-ACUUGUGCCgaUGu---CGGAG----UAGGC- -5'
24732 3' -53.6 NC_005264.1 + 137341 0.69 0.878417
Target:  5'- uCCUaGACGCGGCcauccUAGCCUCGUUCc -3'
miRNA:   3'- -GGAcUUGUGCCGau---GUCGGAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 137287 0.67 0.951795
Target:  5'- cCCUGGACGa-GCgcgACAagcGCCUUGUCCGc -3'
miRNA:   3'- -GGACUUGUgcCGa--UGU---CGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 134843 0.7 0.855921
Target:  5'- aCCUGGAucgaugggcCGCGGCUACGGCggUCGUCg- -3'
miRNA:   3'- -GGACUU---------GUGCCGAUGUCGg-AGUAGgc -5'
24732 3' -53.6 NC_005264.1 + 133178 0.72 0.759213
Target:  5'- cCCUGAugcuacgcaACGCGGCggaccgACugcgGGCCUCGUUCGu -3'
miRNA:   3'- -GGACU---------UGUGCCGa-----UG----UCGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 132100 0.66 0.963043
Target:  5'- cCCUGAgcggcucuuuGCGCGGgaAgAGCCUCcugaugCCGc -3'
miRNA:   3'- -GGACU----------UGUGCCgaUgUCGGAGua----GGC- -5'
24732 3' -53.6 NC_005264.1 + 129234 0.75 0.587122
Target:  5'- gCC-GAACuuuaGCGGCgGCaAGCCUCGUCCGa -3'
miRNA:   3'- -GGaCUUG----UGCCGaUG-UCGGAGUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 127233 0.68 0.922957
Target:  5'- cCCggGGACACGGagacGCGGCCaUCggCCGa -3'
miRNA:   3'- -GGa-CUUGUGCCga--UGUCGG-AGuaGGC- -5'
24732 3' -53.6 NC_005264.1 + 125498 0.69 0.878417
Target:  5'- --cGAGCGCGGCcaacaaAGCCUCuAUCCu -3'
miRNA:   3'- ggaCUUGUGCCGaug---UCGGAG-UAGGc -5'
24732 3' -53.6 NC_005264.1 + 124432 0.67 0.951795
Target:  5'- --aGAGCGCGuGCUccGCGGCCUCGagaUCUu -3'
miRNA:   3'- ggaCUUGUGC-CGA--UGUCGGAGU---AGGc -5'
24732 3' -53.6 NC_005264.1 + 124178 0.66 0.977485
Target:  5'- -aUGGGCGCcGCcGCGGCCaUCAUCuCGa -3'
miRNA:   3'- ggACUUGUGcCGaUGUCGG-AGUAG-GC- -5'
24732 3' -53.6 NC_005264.1 + 124068 0.75 0.5861
Target:  5'- aCCUGGACACGGCUuugaaauuugacgACGGgCUCG-CCa -3'
miRNA:   3'- -GGACUUGUGCCGA-------------UGUCgGAGUaGGc -5'
24732 3' -53.6 NC_005264.1 + 122400 0.69 0.878417
Target:  5'- gUCUGGGgGCGGCgAgGGCUUC-UCCGg -3'
miRNA:   3'- -GGACUUgUGCCGaUgUCGGAGuAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.