miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 3' -53.6 NC_005264.1 + 3373 0.69 0.878417
Target:  5'- gUCUGGGgGCGGCgAgGGCUUC-UCCGg -3'
miRNA:   3'- -GGACUUgUGCCGaUgUCGGAGuAGGC- -5'
24732 3' -53.6 NC_005264.1 + 124432 0.67 0.951795
Target:  5'- --aGAGCGCGuGCUccGCGGCCUCGagaUCUu -3'
miRNA:   3'- ggaCUUGUGC-CGA--UGUCGGAGU---AGGc -5'
24732 3' -53.6 NC_005264.1 + 35556 0.67 0.950557
Target:  5'- uCCUGAACcaacacgccaGCGaagaggggggagcuGCUGCGGCUUCggCCGa -3'
miRNA:   3'- -GGACUUG----------UGC--------------CGAUGUCGGAGuaGGC- -5'
24732 3' -53.6 NC_005264.1 + 152168 0.67 0.94314
Target:  5'- aCUUGAACACGG-UACAGU--UAUCCa -3'
miRNA:   3'- -GGACUUGUGCCgAUGUCGgaGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 153091 0.68 0.938456
Target:  5'- --gGAGCACGGCgGCuuGCCUgCcgCCGa -3'
miRNA:   3'- ggaCUUGUGCCGaUGu-CGGA-GuaGGC- -5'
24732 3' -53.6 NC_005264.1 + 55169 0.68 0.927835
Target:  5'- cCCUGAACcgcgucuacgagaACGGCaacuauUACAGCCgCGUCUu -3'
miRNA:   3'- -GGACUUG-------------UGCCG------AUGUCGGaGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 8206 0.68 0.922957
Target:  5'- cCCggGGACACGGagacGCGGCCaUCggCCGa -3'
miRNA:   3'- -GGa-CUUGUGCCga--UGUCGG-AGuaGGC- -5'
24732 3' -53.6 NC_005264.1 + 26390 0.69 0.898265
Target:  5'- cUCUGAGCGCGGCcuCAGCgcccaugCUCuUCCGc -3'
miRNA:   3'- -GGACUUGUGCCGauGUCG-------GAGuAGGC- -5'
24732 3' -53.6 NC_005264.1 + 125498 0.69 0.878417
Target:  5'- --cGAGCGCGGCcaacaaAGCCUCuAUCCu -3'
miRNA:   3'- ggaCUUGUGCCGaug---UCGGAG-UAGGc -5'
24732 3' -53.6 NC_005264.1 + 143499 0.67 0.95952
Target:  5'- uCCUGGA-AUGGCUacGCGGCgUCcuUCCGg -3'
miRNA:   3'- -GGACUUgUGCCGA--UGUCGgAGu-AGGC- -5'
24732 3' -53.6 NC_005264.1 + 29381 0.66 0.963043
Target:  5'- -aUGAGCugGaGCUugAGCCguaagCGUgCGg -3'
miRNA:   3'- ggACUUGugC-CGAugUCGGa----GUAgGC- -5'
24732 3' -53.6 NC_005264.1 + 132100 0.66 0.963043
Target:  5'- cCCUGAgcggcucuuuGCGCGGgaAgAGCCUCcugaugCCGc -3'
miRNA:   3'- -GGACU----------UGUGCCgaUgUCGGAGua----GGC- -5'
24732 3' -53.6 NC_005264.1 + 92428 0.66 0.974999
Target:  5'- aCCUGAACgaGCcGC-ACGGUCUCGUCa- -3'
miRNA:   3'- -GGACUUG--UGcCGaUGUCGGAGUAGgc -5'
24732 3' -53.6 NC_005264.1 + 103060 0.66 0.974999
Target:  5'- --cGGACACGGCcguggACAGCCaCggCCa -3'
miRNA:   3'- ggaCUUGUGCCGa----UGUCGGaGuaGGc -5'
24732 3' -53.6 NC_005264.1 + 25785 0.66 0.974999
Target:  5'- gCCUGGAucugcuCACGGCgguCAGCUUUggCCu -3'
miRNA:   3'- -GGACUU------GUGCCGau-GUCGGAGuaGGc -5'
24732 3' -53.6 NC_005264.1 + 110331 0.66 0.972318
Target:  5'- gCCUGuuCgACGGCgUGCAGCCUUcaguagaccaGUUCGa -3'
miRNA:   3'- -GGACuuG-UGCCG-AUGUCGGAG----------UAGGC- -5'
24732 3' -53.6 NC_005264.1 + 70021 0.66 0.972318
Target:  5'- uCCUucuuCuuGGCUucacugGCGGCCUCGUCCu -3'
miRNA:   3'- -GGAcuu-GugCCGA------UGUCGGAGUAGGc -5'
24732 3' -53.6 NC_005264.1 + 57132 0.66 0.969436
Target:  5'- aCCUGGGCGCGGacgUAGgCUgGUCUGu -3'
miRNA:   3'- -GGACUUGUGCCgauGUCgGAgUAGGC- -5'
24732 3' -53.6 NC_005264.1 + 99890 0.66 0.969137
Target:  5'- gUCUGAccccgaacaaaagGCGCGGCuUGCGGCCgcgCAagcCCGc -3'
miRNA:   3'- -GGACU-------------UGUGCCG-AUGUCGGa--GUa--GGC- -5'
24732 3' -53.6 NC_005264.1 + 27674 0.66 0.966347
Target:  5'- aCCgagGuACGCGGCUGgccuCuGCCUCG-CCGa -3'
miRNA:   3'- -GGa--CuUGUGCCGAU----GuCGGAGUaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.