miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 3' -52.4 NC_005264.1 + 3666 0.66 0.987705
Target:  5'- uGGGG-GCgacUGGCaUugGUGCggGGCc -3'
miRNA:   3'- -CCCUaCGaauGCCG-AugCACGuaCCG- -5'
24733 3' -52.4 NC_005264.1 + 22158 0.66 0.986096
Target:  5'- cGGuaGUGCUuaagguUGCGGCggcCGUGguUGGUu -3'
miRNA:   3'- cCC--UACGA------AUGCCGau-GCACguACCG- -5'
24733 3' -52.4 NC_005264.1 + 17693 0.66 0.986096
Target:  5'- aGGccGCg-GCGGCU-CGUGUcgGGUg -3'
miRNA:   3'- cCCuaCGaaUGCCGAuGCACGuaCCG- -5'
24733 3' -52.4 NC_005264.1 + 54923 0.66 0.982399
Target:  5'- cGGcGcUGCUggcgaACGGCUGCGa--GUGGCu -3'
miRNA:   3'- -CC-CuACGAa----UGCCGAUGCacgUACCG- -5'
24733 3' -52.4 NC_005264.1 + 155954 0.66 0.982399
Target:  5'- uGGGAcUGC--GCGGCUcGCGgacGCucUGGCu -3'
miRNA:   3'- -CCCU-ACGaaUGCCGA-UGCa--CGu-ACCG- -5'
24733 3' -52.4 NC_005264.1 + 82625 0.66 0.980294
Target:  5'- uGGGAggGgaUAUGcGCgugGCGUuuGCGUGGCc -3'
miRNA:   3'- -CCCUa-CgaAUGC-CGa--UGCA--CGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 150785 0.66 0.978006
Target:  5'- -aGAUGauaUUAUGGggGCGUGUggGGCa -3'
miRNA:   3'- ccCUACg--AAUGCCgaUGCACGuaCCG- -5'
24733 3' -52.4 NC_005264.1 + 79881 0.67 0.975529
Target:  5'- cGGGG-GCgcgGCGGCgacCGUcGCA-GGCg -3'
miRNA:   3'- -CCCUaCGaa-UGCCGau-GCA-CGUaCCG- -5'
24733 3' -52.4 NC_005264.1 + 99907 0.67 0.975529
Target:  5'- aGGcGcgGCUUGCGGCcGCGcaagcccGCGcGGCu -3'
miRNA:   3'- -CC-CuaCGAAUGCCGaUGCa------CGUaCCG- -5'
24733 3' -52.4 NC_005264.1 + 100066 0.67 0.975529
Target:  5'- aGGGuuUGCgg--GGCcuaggGCGUaGCAUGGCg -3'
miRNA:   3'- -CCCu-ACGaaugCCGa----UGCA-CGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 62963 0.67 0.973947
Target:  5'- cGGGGUcagacuuccccGCcaccGCGGCUuuggcggacuccaagGCGUGCuUGGCg -3'
miRNA:   3'- -CCCUA-----------CGaa--UGCCGA---------------UGCACGuACCG- -5'
24733 3' -52.4 NC_005264.1 + 6819 0.67 0.972853
Target:  5'- aGGGUGUUgccggagGCGGCgGCGacUAUGGCg -3'
miRNA:   3'- cCCUACGAa------UGCCGaUGCacGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 125845 0.67 0.972853
Target:  5'- aGGGUGUUgccggagGCGGCgGCGacUAUGGCg -3'
miRNA:   3'- cCCUACGAa------UGCCGaUGCacGUACCG- -5'
24733 3' -52.4 NC_005264.1 + 124291 0.67 0.969972
Target:  5'- cGGGAgGCgagucGCGGCcggACG-GCggGGCg -3'
miRNA:   3'- -CCCUaCGaa---UGCCGa--UGCaCGuaCCG- -5'
24733 3' -52.4 NC_005264.1 + 5264 0.67 0.969972
Target:  5'- cGGGAgGCgagucGCGGCcggACG-GCggGGCg -3'
miRNA:   3'- -CCCUaCGaa---UGCCGa--UGCaCGuaCCG- -5'
24733 3' -52.4 NC_005264.1 + 145895 0.67 0.968142
Target:  5'- gGGGAUGCUgGCGaGCUggaacagcuccgGCGgcgggucagcgcggGCAUGGg -3'
miRNA:   3'- -CCCUACGAaUGC-CGA------------UGCa-------------CGUACCg -5'
24733 3' -52.4 NC_005264.1 + 146420 0.67 0.966879
Target:  5'- cGGGUGCUgAUGGCU-CGaUGCcgcGGCu -3'
miRNA:   3'- cCCUACGAaUGCCGAuGC-ACGua-CCG- -5'
24733 3' -52.4 NC_005264.1 + 23955 0.67 0.966879
Target:  5'- uGGGuAUGUgggGCGGUUG-GUGgGUGGUg -3'
miRNA:   3'- -CCC-UACGaa-UGCCGAUgCACgUACCG- -5'
24733 3' -52.4 NC_005264.1 + 91889 0.67 0.966879
Target:  5'- cGGGGUGgUUggccGCGGCaGCGauggGCG-GGCg -3'
miRNA:   3'- -CCCUACgAA----UGCCGaUGCa---CGUaCCG- -5'
24733 3' -52.4 NC_005264.1 + 107392 0.67 0.966879
Target:  5'- aGGGAcGgUUGCGGCUGCu----UGGCa -3'
miRNA:   3'- -CCCUaCgAAUGCCGAUGcacguACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.