miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 5' -50.4 NC_005264.1 + 162617 0.67 0.991666
Target:  5'- -cGCCAGGCACggaaaGCGAUCGgGggCuACGa -3'
miRNA:   3'- uuCGGUUUGUG-----CGCUAGUgCaaG-UGC- -5'
24733 5' -50.4 NC_005264.1 + 159987 0.66 0.994601
Target:  5'- cAGCCGcAGCGgGCGAcggCGCGagCGCGa -3'
miRNA:   3'- uUCGGU-UUGUgCGCUa--GUGCaaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 153364 0.66 0.993734
Target:  5'- cGGCagacaAGACGCGCGAa-GCGUUgCGCGa -3'
miRNA:   3'- uUCGg----UUUGUGCGCUagUGCAA-GUGC- -5'
24733 5' -50.4 NC_005264.1 + 153209 0.69 0.962622
Target:  5'- gGAGCU--AUACGUGAUCGCGUacagccacgUUACGg -3'
miRNA:   3'- -UUCGGuuUGUGCGCUAGUGCA---------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 152237 0.69 0.975026
Target:  5'- -uGCCucGCGCGauaugGAUCGCGgUCGCGg -3'
miRNA:   3'- uuCGGuuUGUGCg----CUAGUGCaAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 151847 0.66 0.99598
Target:  5'- gGGGCCGccgcuccggcggcGACACGUGGgggGCGUcuUCGCGg -3'
miRNA:   3'- -UUCGGU-------------UUGUGCGCUag-UGCA--AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 150729 0.67 0.987592
Target:  5'- -cGCCAAaggucGCGCGCGGggcgUACuuGUUCGCGu -3'
miRNA:   3'- uuCGGUU-----UGUGCGCUa---GUG--CAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 148482 0.74 0.824324
Target:  5'- cGGCUAgacuauggGACGCGCuGGUCGCGUUgGCGg -3'
miRNA:   3'- uUCGGU--------UUGUGCG-CUAGUGCAAgUGC- -5'
24733 5' -50.4 NC_005264.1 + 147352 0.69 0.972255
Target:  5'- cAGGCCAGGCccaugcccgcCGCGAUCGCcgcuUUCGCGu -3'
miRNA:   3'- -UUCGGUUUGu---------GCGCUAGUGc---AAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 147287 0.68 0.984119
Target:  5'- gGAGCCAcAACACGUacacGGUCAUGaUCAUa -3'
miRNA:   3'- -UUCGGU-UUGUGCG----CUAGUGCaAGUGc -5'
24733 5' -50.4 NC_005264.1 + 144979 0.69 0.962622
Target:  5'- -cGCCGAuugcuCACGCGGUCgaacaGCGcgCGCGa -3'
miRNA:   3'- uuCGGUUu----GUGCGCUAG-----UGCaaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 142022 0.68 0.979954
Target:  5'- -cGCCGucCGCGCGAUUggcgugcaugGCGUgCACGg -3'
miRNA:   3'- uuCGGUuuGUGCGCUAG----------UGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 141880 1.07 0.014173
Target:  5'- aAAGCCAAACACGCGAUCACGUUCACGu -3'
miRNA:   3'- -UUCGGUUUGUGCGCUAGUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 136150 0.69 0.972255
Target:  5'- --aCCAGACugGCGAguuaGCGUUCAaCGc -3'
miRNA:   3'- uucGGUUUGugCGCUag--UGCAAGU-GC- -5'
24733 5' -50.4 NC_005264.1 + 133958 0.7 0.95895
Target:  5'- uGGCCGGGgucuuCGCGGUgGCGUUCGCc -3'
miRNA:   3'- uUCGGUUUgu---GCGCUAgUGCAAGUGc -5'
24733 5' -50.4 NC_005264.1 + 128843 0.68 0.97759
Target:  5'- cGGCCGGcuACAUGgGccgccgCACGUUCGCGa -3'
miRNA:   3'- uUCGGUU--UGUGCgCua----GUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 126166 0.67 0.992759
Target:  5'- uGAGCCGAcgaaACGUGGUCGCGgcCAgGu -3'
miRNA:   3'- -UUCGGUUug--UGCGCUAGUGCaaGUgC- -5'
24733 5' -50.4 NC_005264.1 + 125171 0.69 0.975026
Target:  5'- aGGGCCGcGCGCccgucGCGcAUCGCGUgCACGa -3'
miRNA:   3'- -UUCGGUuUGUG-----CGC-UAGUGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 119211 0.66 0.993734
Target:  5'- cGAGCguAACGCGCGAcCACGcgaggUUugGc -3'
miRNA:   3'- -UUCGguUUGUGCGCUaGUGCa----AGugC- -5'
24733 5' -50.4 NC_005264.1 + 117611 0.67 0.989092
Target:  5'- cGGCCAugccuACGCuGCGcUCGgCGUUCAUGg -3'
miRNA:   3'- uUCGGUu----UGUG-CGCuAGU-GCAAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.