miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24735 5' -57 NC_005264.1 + 36037 0.66 0.877464
Target:  5'- aUCCCAGCGCCcCCucgcucaGUGCCCg---- -3'
miRNA:   3'- gAGGGUUGCGGuGGc------UACGGGgauau -5'
24735 5' -57 NC_005264.1 + 155064 0.66 0.877464
Target:  5'- aUCCCAGCGCCcCCucgcucaGUGCCCg---- -3'
miRNA:   3'- gAGGGUUGCGGuGGc------UACGGGgauau -5'
24735 5' -57 NC_005264.1 + 78621 0.66 0.876748
Target:  5'- gCUCgCGGCGCCucuucuguuaaccGCCGcgGCggCCCUGUGc -3'
miRNA:   3'- -GAGgGUUGCGG-------------UGGCuaCG--GGGAUAU- -5'
24735 5' -57 NC_005264.1 + 40132 0.66 0.870209
Target:  5'- cCUCCuCGucuCGCCGCCGAgacgGCCgCCc--- -3'
miRNA:   3'- -GAGG-GUu--GCGGUGGCUa---CGG-GGauau -5'
24735 5' -57 NC_005264.1 + 159159 0.66 0.870209
Target:  5'- cCUCCuCGucuCGCCGCCGAgacgGCCgCCc--- -3'
miRNA:   3'- -GAGG-GUu--GCGGUGGCUa---CGG-GGauau -5'
24735 5' -57 NC_005264.1 + 162227 0.66 0.870209
Target:  5'- cCUCCagcgAACGCCACCGuagucGCCUCg--- -3'
miRNA:   3'- -GAGGg---UUGCGGUGGCua---CGGGGauau -5'
24735 5' -57 NC_005264.1 + 161183 0.66 0.862742
Target:  5'- -cCCCAcCGUCGCCcAUGUaCCCUAUAu -3'
miRNA:   3'- gaGGGUuGCGGUGGcUACG-GGGAUAU- -5'
24735 5' -57 NC_005264.1 + 110631 0.66 0.862742
Target:  5'- --aCCAgcucGCGCCACCGc-GCCCCa--- -3'
miRNA:   3'- gagGGU----UGCGGUGGCuaCGGGGauau -5'
24735 5' -57 NC_005264.1 + 109346 0.66 0.862742
Target:  5'- cCUCCCGGCGCa--UGggGCUUCUAUGg -3'
miRNA:   3'- -GAGGGUUGCGgugGCuaCGGGGAUAU- -5'
24735 5' -57 NC_005264.1 + 137222 0.66 0.862742
Target:  5'- -cCCCAcCGCCGCCG-UGUUCCg--- -3'
miRNA:   3'- gaGGGUuGCGGUGGCuACGGGGauau -5'
24735 5' -57 NC_005264.1 + 77947 0.66 0.862742
Target:  5'- cCUCCCGu--CCugCGcgGCCCgCUAUGu -3'
miRNA:   3'- -GAGGGUugcGGugGCuaCGGG-GAUAU- -5'
24735 5' -57 NC_005264.1 + 25885 0.66 0.855067
Target:  5'- -aCCCuGCGUagaUugCGAUGCCCCa--- -3'
miRNA:   3'- gaGGGuUGCG---GugGCUACGGGGauau -5'
24735 5' -57 NC_005264.1 + 69268 0.66 0.855067
Target:  5'- uUUUCGGCGCCA-UGAUuuuacGCCCCUGUGg -3'
miRNA:   3'- gAGGGUUGCGGUgGCUA-----CGGGGAUAU- -5'
24735 5' -57 NC_005264.1 + 97983 0.66 0.855067
Target:  5'- uCUCCCA--GCCGCCGGacuucgUGUUCCUGg- -3'
miRNA:   3'- -GAGGGUugCGGUGGCU------ACGGGGAUau -5'
24735 5' -57 NC_005264.1 + 142210 0.66 0.847191
Target:  5'- --gCCAACgGUCGCCcaGUGCCCCUAg- -3'
miRNA:   3'- gagGGUUG-CGGUGGc-UACGGGGAUau -5'
24735 5' -57 NC_005264.1 + 67949 0.66 0.847191
Target:  5'- uUCCCGGCGCCugCGGcucgagaaagGCUUCUGc- -3'
miRNA:   3'- gAGGGUUGCGGugGCUa---------CGGGGAUau -5'
24735 5' -57 NC_005264.1 + 151749 0.66 0.846393
Target:  5'- uCUCUCGACGCCGCagcaucguaauuaCGAggcggguacuUGCCCCg--- -3'
miRNA:   3'- -GAGGGUUGCGGUG-------------GCU----------ACGGGGauau -5'
24735 5' -57 NC_005264.1 + 157983 0.67 0.83912
Target:  5'- cCUCgCAGCGUgGCCGAgccuacucugUGCCgCCUGg- -3'
miRNA:   3'- -GAGgGUUGCGgUGGCU----------ACGG-GGAUau -5'
24735 5' -57 NC_005264.1 + 38956 0.67 0.83912
Target:  5'- cCUCgCAGCGUgGCCGAgccuacucugUGCCgCCUGg- -3'
miRNA:   3'- -GAGgGUUGCGgUGGCU----------ACGG-GGAUau -5'
24735 5' -57 NC_005264.1 + 102529 0.67 0.822424
Target:  5'- aUCCCAuACGCC-CCGGUcGCgCCCg--- -3'
miRNA:   3'- gAGGGU-UGCGGuGGCUA-CG-GGGauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.