Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24738 | 5' | -55.6 | NC_005264.1 | + | 31411 | 0.66 | 0.936425 |
Target: 5'- gGGC-CGCCUCGgggcgggagaUCUUauagCUCGacGGGACCg -3' miRNA: 3'- -UCGcGCGGAGC----------AGAAa---GAGC--CUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 70040 | 0.75 | 0.518971 |
Target: 5'- uGGCG-GCCUCGUCcucUUUaggggggUCGGGGACCa -3' miRNA: 3'- -UCGCgCGGAGCAGa--AAG-------AGCCUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 30374 | 0.73 | 0.609554 |
Target: 5'- cGGCGcCGCCgCGUCgcgUCUCGGcGGCg -3' miRNA: 3'- -UCGC-GCGGaGCAGaa-AGAGCCuCUGg -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 100572 | 0.71 | 0.729953 |
Target: 5'- aAGCGUGCCgCGaUCg-UCUCGGAaACCg -3' miRNA: 3'- -UCGCGCGGaGC-AGaaAGAGCCUcUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 31861 | 0.71 | 0.739655 |
Target: 5'- gGGCGCGaCCUCGUCaggcaaguggacUUUCaccccagCGGcGACCg -3' miRNA: 3'- -UCGCGC-GGAGCAG------------AAAGa------GCCuCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 138444 | 0.69 | 0.804491 |
Target: 5'- cGCGCGCUUa--CUUggacgaccuaCUCGGGGACCa -3' miRNA: 3'- uCGCGCGGAgcaGAAa---------GAGCCUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 30408 | 0.69 | 0.818362 |
Target: 5'- cGCGCGCCggugCGgagagCUgcggcggaggaggUCUCGGGGgaGCCg -3' miRNA: 3'- uCGCGCGGa---GCa----GAa------------AGAGCCUC--UGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 28320 | 0.69 | 0.830152 |
Target: 5'- cGCGCGCCUaCGUCUagUCgguaUCGGcacGACUu -3' miRNA: 3'- uCGCGCGGA-GCAGAa-AG----AGCCu--CUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 123243 | 0.69 | 0.838362 |
Target: 5'- aAGCGCGCagcucCGUCUgg--CGGGGGCa -3' miRNA: 3'- -UCGCGCGga---GCAGAaagaGCCUCUGg -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 30548 | 0.68 | 0.846388 |
Target: 5'- uGGCGCGaacCCUCGUCguccUCcgagUCGGuagaGGACCa -3' miRNA: 3'- -UCGCGC---GGAGCAGaa--AG----AGCC----UCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 146080 | 0.68 | 0.854224 |
Target: 5'- cAGCGCGCCcccgCG-CgggUCUUGGuGGACUa -3' miRNA: 3'- -UCGCGCGGa---GCaGaa-AGAGCC-UCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 56711 | 0.66 | 0.931479 |
Target: 5'- cGCGCgacaagcuGCCauugcucugUCGUgcCUUUCcgCGGAGGCCg -3' miRNA: 3'- uCGCG--------CGG---------AGCA--GAAAGa-GCCUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 5150 | 0.66 | 0.931479 |
Target: 5'- gGGCGuCGCCgUCGUCg---UCGGugccGGCCu -3' miRNA: 3'- -UCGC-GCGG-AGCAGaaagAGCCu---CUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 41213 | 0.66 | 0.920884 |
Target: 5'- cGGCucGCGCCU--UCUccUUUGGAGACCu -3' miRNA: 3'- -UCG--CGCGGAgcAGAaaGAGCCUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 30861 | 0.67 | 0.911733 |
Target: 5'- cGGCGCGCCgCccgguaggcaacggcGUCUcgaUCGGGGACg -3' miRNA: 3'- -UCGCGCGGaG---------------CAGAaagAGCCUCUGg -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 26315 | 0.67 | 0.903238 |
Target: 5'- cGUcCGCgUCGUCUccggUCUCGGAccuagcuauGACCu -3' miRNA: 3'- uCGcGCGgAGCAGAa---AGAGCCU---------CUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 83140 | 0.67 | 0.883533 |
Target: 5'- aGGCGCGUCUgcccucauggUGUCUgUCgCGGGGAUg -3' miRNA: 3'- -UCGCGCGGA----------GCAGAaAGaGCCUCUGg -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 125045 | 0.68 | 0.861861 |
Target: 5'- cGGCGCGCCUCuUCUccgccgCUCGccucGAGuCCu -3' miRNA: 3'- -UCGCGCGGAGcAGAaa----GAGC----CUCuGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 88223 | 0.66 | 0.945617 |
Target: 5'- uAGCGCGCCaagaUCG-C-UUCUaCGcAGACCa -3' miRNA: 3'- -UCGCGCGG----AGCaGaAAGA-GCcUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 149401 | 0.73 | 0.609554 |
Target: 5'- cGGCGcCGCCgCGUCgcgUCUCGGcGGCg -3' miRNA: 3'- -UCGC-GCGGaGCAGaa-AGAGCCuCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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